Betta splendens (Siamese fighting fish): 114852969
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Entry
114852969 CDS
T08231
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
114852969 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bspl03032
]
114852969 (topbp1)
03400 DNA repair and recombination proteins [BR:
bspl03400
]
114852969 (topbp1)
DNA replication proteins [BR:
bspl03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
114852969 (topbp1)
DNA repair and recombination proteins [BR:
bspl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
114852969 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
ECT2_BRCT0
BRCT_TopB1_SLF1
Motif
Other DBs
NCBI-GeneID:
114852969
NCBI-ProteinID:
XP_029001546
UniProt:
A0A6P7M3F2
LinkDB
All DBs
Position
4:complement(20173530..20182287)
Genome browser
AA seq
1550 aa
AA seq
DB search
MSKDKEGYIVKFVKSKGHQAEYVLKAYEAILELQSEKYVNDINEDAVLQMHQKDKSLFVF
SSFTSTAFLHCKKLGCRVVSPLVVLYCLQQQRCVPRAEKPVYNMAMADITISCTSLDKAT
RTEVMDLVQLMGGRVYLDLNVSVTHLIAGEVGSKKYLVAASLGKPILLPAWVKACWEKSQ
ESLFKCTDLPLEDYLCPILRGCTVCVTGLSSAERKEVQRLCEQHGASYTGQLKMNECTHL
IVSEPTGQKYECARKWNVYCVTLHWLFDSIEKGFCQDESRYKVESNASKTTRPNTSTPTG
TTKKEEGLSLLGLSHISVNASMTINDTALTNGTISRLEGPDPVDNLDLTVCPTDDLLDGC
KLYLCGLPEKKLDKLRRLVNTAGGLRFNQPSEELTHVVMGELDQGLKTFFSKAAHRPHFV
TVQWLLDSFSKGSLLPEADYLHPDCLPPAAAVVSVPTHKTSASRLSAGPPVASPSTPRQN
RADEYLLSQYMDDDPTVVEIPPPPFEGNSRTSISLAPEPELELCEPKHIRGAEMDSTIQD
ADEGGLFAGKRFLLVGFGTEAEAQLSQLVTESGGKLLTGRTRVVADYAVVPLLGCSVEAT
VDEVVTDTWLAMCIEKESVLHLPSNPLFTPVPVIDGRFPLKDCVLSVSQFTGSERESLVE
LAKHLGATVQDYFVRLANQKKGMLASTHLVLQSPEGTKYQAAKKWGLPAVTMYWILESAR
IGKRADEERFLVDRPPSPDRDEESFVGGSQKPIVPPPARSSPEIPLLGVQSGKAVTPLDL
GRFQSKVFQSVLDKMKPREDVNTPKQNQQGGRRNPLQKEASLQLDTPSRFLSRDQLFRPS
FNVKDALGALETPGGRSKPEEMEGTPLTDIVNRNMKVALANSTCTNISDMQAMFASPQLT
KTTDREVPVKETGPLTGVVICVGKKLSKMQSELNAIAASLGADFRWACDDTVTHYIYQGR
VGDNTREYKGVKERGLHVVSQYWLQACAEEQRHVPESLYPFTYNPKMSLNLSQMPSSSQR
SPPFTRTQLKDLTEAKDHTAEHRVTDDATSLRRVSDGSVEQDDTNAESADISETLEMREN
LQRQLQEIMSATKLTSGRRTSVRLTRMGSGGADSRPNTPDGSRVGRTGSRRTLEALRVSR
EAAMDINTEPSQSEQIVWDDPTAREERAKLADNLQWPGSPSQHSQSLAPPAAPPAETIPS
FRDSMTDSELVEMAACDVIDQHIGLKVTTSRKLENNVPTPEAPSIDLPVVPEPQEREEEK
PPPRFQLSSLTPQERIDYSHLIEELGGVVLDKQSFDPSCSHIIVGTPLRNEKYLAAMAAG
KWILHRSYLEACRSVGHFIQEDQYEWGCSSILDALPSITTQQRRLASAAMRWRKALQGQS
EDGGAFSGWTVMLNIDQSRESGFRRLLQSGGAKVTASLLLHWVHVICPSSSAPVLLHYHY
NPLFLVMTFCFLLQVLPSPTPSLYKEATHLFADFNRLKPGDFRVDVSEATSQGVTCLKPE
YIADYLMQDPTPPVDLYLLSEAPAGETPGTPSRKRKAAADASRLKKSRLN
NT seq
4653 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaagacaaggaaggatatattgttaagtttgtgaaaagtaaaggacatcaagcg
gagtatgtcctcaaggcttatgaggccattttggagctgcagtctgagaaatacgtgaac
gatatcaacgaggatgcagttttacaaatgcaccagaaagacaagtctttgtttgtgttc
agcagttttacctctacagcttttctgcactgcaaaaagctcggctgccgagtggtgagt
ccactggtggtgttgtactgcctgcagcagcagcgctgtgtccccagagcagagaaacct
gtttataacatggccatggctgacatcactatatcctgcaccagcctggacaaggcaaca
cggacggaggtcatggatctagtgcaactcatgggtggacgggtgtatcttgacctcaat
gtgtctgtcacacacctgatagctggagaagtgggcagcaagaaatatttggtagctgcg
agtctgggtaaacccatcctgctacctgcatgggtcaaagcttgctgggagaaatctcag
gagagccttttcaagtgtacagatttaccccttgaagactatctgtgtcctatcctgcgt
ggctgcacggtctgcgtgactggtctctccagtgcagagcgcaaagaagtgcagcggctt
tgtgagcagcatggcgccagttacacaggccaactcaaaatgaatgagtgcacacacctc
attgtcagtgaaccaacaggtcagaagtacgagtgtgctcggaagtggaatgtgtattgc
gtgacactacactggctatttgacagcatagaaaagggcttttgtcaagatgaaagcagg
tacaaagtggagtccaatgcatcaaaaaccactcgaccaaatacttctacgcccactggc
accaccaagaaggaggagggtttatctctgttgggcttgagccacatttctgtcaatgcc
agcatgacaataaatgatacagccctcactaatggcactataagccgcctggaaggccca
gaccctgtagataatcttgacctcactgtctgcccaactgatgatttacttgatggatgc
aaactttatctgtgtggcctgccagagaagaaactggacaaactgcgtcggcttgtgaac
actgcaggaggtctgcgatttaaccagcctagtgaagaactaacacatgtagtgatgggg
gagttggaccaaggtctcaagacgtttttctccaaagcagctcacaggccccactttgta
acagtgcagtggctgctggatagtttctccaaaggcagtctgcttcccgaagccgactat
ctccaccctgactgtctgcctcctgctgcagctgtggtatctgtgccaacacataagact
tctgcctccagactttcagctggtcctcctgtggccagtccaagcacaccgaggcaaaac
agagcagatgagtatctgctgtcacagtacatggatgatgaccctacagtagttgagatc
ccaccaccaccttttgagggcaacagcaggacatccatcagtttagctccagagcctgag
cttgaactttgtgaaccaaagcacatcagaggagcagagatggactcaaccatacaggat
gctgatgaagggggtttatttgcagggaaacgttttctccttgtgggctttggtacagaa
gcagaagctcagctgtctcagctagtgactgaaagtggaggcaagctattgactggccgc
acacgagttgtggcggactatgctgtggtcccactgctgggctgctctgtggaggccaca
gtggatgaggtggtgactgatacctggctggctatgtgcatagagaaggagagtgttttg
cacctgccctccaaccctttgttcaccccggttcctgtgatagatggacgatttcctctc
aaggattgtgttctctctgtcagccagttcaccggatcagagagggagtctttggtggag
ttggccaagcacctcggagcaactgttcaggattactttgttcgcctagccaaccagaaa
aaaggcatgctggccagcactcatttagtgctgcagagccctgaaggcacaaagtaccag
gcagctaagaaatgggggctgcctgctgtcactatgtactggatactggagtcagctcga
atcggcaaaagggctgatgaggagcgatttttagttgacagaccaccatcaccagaccga
gatgaagagagctttgttggtggttcccagaaaccaatcgttcctcctccagctcgttca
tctccagagattcctttgctaggtgttcagagtggtaaggctgtcacaccactggattta
ggacgctttcagagcaaagtcttccagtctgtgttggacaaaatgaagcccagagaagac
gtaaacacaccaaaacaaaaccagcagggtggtagaaggaatccacttcaaaaggaggcc
tcgctgcagctggatactccttctcgttttctcagcagagaccagctcttcaggccctcc
tttaatgtcaaggatgcactaggggctttggagactccaggtgggagatccaagcccgaa
gagatggaggggactccactgacggacattgtcaacagaaacatgaaggtggctctggct
aacagcacctgcactaatatctccgacatgcaagcaatgtttgcaagcccccagctaacg
aagacaactgacagggaggttccagtaaaagaaactggtcccctaactggagttgtgatc
tgtgtgggaaagaaactgagcaaaatgcagagtgaactaaatgcaatcgctgcatctctg
ggagctgatttcagatgggcttgtgatgacacggtgacacactacatctaccagggccgt
gtgggggacaacacacgggagtacaaaggagtgaaggagagaggactgcatgtggtctcc
cagtactggctacaggcttgtgctgaggagcagagacatgtcccagagtctctgtatcct
tttacttacaatccgaaaatgagcctaaacctcagccagatgcccagcagctctcagagg
tctccaccttttacacgaacacaactgaaagatctcaccgaggcaaaggaccacacggct
gaacacagggtcacggacgatgctacaagcctacgtcgtgtgagtgatggaagtgtcgaa
caggacgacacaaatgcagagagtgcagatatttcagagactctggaaatgagagagaac
ctgcaaaggcagctccaggagattatgtcagccactaaactgacgtcaggaaggcgtacc
tccgtcagacttaccagaatgggatcaggaggcgcagattcacgacccaacacacctgac
gggagtcgggttggacgcactgggagcagacgtactctggaagctctaagggtttccaga
gaagcagctatggacataaacacagaaccatcccagagtgaacagatagtttgggatgac
cctacagcccgggaggagcgagccaagctggctgacaatttacagtggccaggcagtccc
tcacagcattcgcagtccctcgcacctccagctgctccccctgcggaaactattccttca
ttcagagactccatgactgactctgagctggtagagatggctgcttgtgatgttatagat
cagcatataggcctgaaggtcacaacatcaaggaagttggaaaataacgtccctacacct
gaagctccaagcattgacctcccagttgtgccggagccacaggagagagaggaagagaag
ccgccacccagattccagctgtcctcactcacccctcaggaacgcattgattacagtcac
ctcatcgaggagcttggtggtgtagttctagacaagcagtcctttgatcccagctgctcc
cacatcatcgtggggacgccactacgcaatgaaaagtatctggcagcaatggctgctggc
aaatggatcttgcatcgctcctatctggaagcctgcagatctgtgggccacttcatccag
gaggatcagtatgagtggggatgtagctccatcctggatgctctgccctccatcaccacc
cagcagaggaggctggcatcagcagccatgcgctggaggaaagctctgcagggacagtct
gaagatgggggtgcattcagcgggtggacagtgatgctgaacattgaccaaagcagagaa
tcaggcttcaggcggctgctgcagtctggaggagcgaaggttactgcttctttactgcta
cattgggttcatgttatctgtccgtcctcatcagcacccgttctcctacattaccattat
aaccctctcttcttggtgatgactttttgttttcttctccaggtcctgcccagtcccacc
ccgtccctttacaaagaggccacgcacctctttgcagacttcaatcggctgaaacctgga
gacttcagagtcgacgtatcggaagctacatcacagggagtgacgtgcttgaaaccagag
tacatcgctgactacctcatgcaggacccgactccacctgttgatctgtacctcctgagt
gaagctcctgctggtgaaactccaggcacgccatctcgtaaacggaaagcagcagctgac
gcctccagactcaaaaagtcgcgtctaaactga
DBGET
integrated database retrieval system
