Betta splendens (Siamese fighting fish): 114853352
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Entry
114853352 CDS
T08231
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl03013
Nucleocytoplasmic transport
bspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114853352
03015 mRNA surveillance pathway
114853352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bspl03019
]
114853352
Enzymes [BR:
bspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
114853352
5.6.2.5 RNA 5'-3' helicase
114853352
Messenger RNA biogenesis [BR:
bspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
114853352
mRNA cycle factors
Common to processing body (P body) and stress granule
114853352
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
AAA_16
DEAD
nSTAND3
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
114853352
NCBI-ProteinID:
XP_029002469
UniProt:
A0A6P7M925
LinkDB
All DBs
Position
4:complement(5968727..5978640)
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AA seq
1101 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDGQVNG
PDEGLHNGGVDDSVAKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPMWKGIGH
VIKVPDNYGDEIAIELRSSVGAPIEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLRVVRLCAKSREAIESPVSFL
ALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG
AGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQW
PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRKL
VNTINPGGRFMSTAMYDAREALIPGSAYDRSSAAGRPSNMYFQTHDQIGMIGAGPGHMAA
MNIPIPFNLVMPPMPPPSFMGQTNGPAAGRGAMKGKPGRGGRQRGRGSGNQGASQGNGPN
SQASQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQ
DSTYQGERAYQHGGVTGLSQY
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctcaccttcctggacaccgaagaa
gcggagctgctcggggcggacacccaaggctccgaatacgacttcaccgacttcaccctg
ccgagccagacgcaaactcaaggccagacccagagccagttggacgggcaggtaaacggt
cccgatgagggtcttcacaacggtggcgtggatgactccgtggccaaagccagccagctg
ttggccgagctcaactttgaggaggacgaagaagacacgtactacaccaaagacctgcct
gtgcacgcgtgcagctactgtggtatccatgatccagcgtgtgtggtgtactgcaatacc
agcaagaagtggttctgtaatggacgtggcaacacatctggcagccacattgtgaaccac
ttggtgagagcgaaatgcaaagaggtgacgctgcataaagacgggccgctgggtgagacc
gtgctggagtgctacaactgtggctgccgcaacgtcttccttctgggcttcattccggcc
aaggctgattctgtggtggttctactctgcaggcaaccgtgtgccagccagagtagcttg
aaagatatcaactgggacagctcgcagtggcaacccctgatccaggatcgctgtttcctg
tcctggttggtgaagatcccatcagaacaggagcagcttcgagcacgtcagatcactgcc
cagcagatcaacaagctggaggagctttggaaggacaatcccacagccactttggaagac
ctagagaagcccggtgtggacgaggaacctcagcatgtgctgctgcgctacgaggacgcc
tatcagtaccagaacatttttggccctttggtcaagctggaggcagactacgacaagaag
cttaaggaatcccagactcaagacaatataaccgtgaggtgggacctgggactgaataaa
aagcggattgcctatttcacactgcccaagactgattcagatatgcgactgatgcagggt
gacgagatctgtctgcgatacaagggagacctggcgccaatgtggaaaggcattggccac
gtcattaaagtccccgacaactatggggatgagatagccattgaattgcggagcagcgtt
ggagcacctatagaaatcccccataacttccaggtggattttgtgtggaagtccacttcc
tttgacagaatgcagagtgctctaaagacctttgcagtggatgagacgtctgtgtctggc
tacatttaccacaagctcctgggccacgaggtggaggatgtcaccatcaagtgccagctg
ccaaaacgcttcactgctcaggggctgcctgacctcaatcactcacaggtgtatgctgtg
aaaacagtgctgcagaggcctctcagtctgattcagggccctcctggcactggcaagacg
gtcacctcggcgaccatcgtctaccacctgtcccgacagggcaacggacccgttctggtc
tgcgctcccagtaacattgctgtggaccagttgactgagaagatcgacaagaccggcctg
agggtagtcaggctgtgcgccaagagccgagaggccatcgagtcaccggtgtcttttctg
gctctgcacaaccagatcagcaacatggacagcatgccggagcttcagaaactgcagcag
ctgaaggatgagacgggggagctgtcgtctgctgatgagaagcgctacagggctttgaaa
cgcacagctgagagggagctactcatgaatgctgacgtcatctgctgcacctgtgtcggg
gcgggtgatcctcgtctggctaagatgcagttccgctccatcctgattgatgagagcacc
caagccactgagcccgagtgtatggtgcctgtggtgttgggagccaagcagctcattctg
gtgggtgaccactgccagttgggccctgtggtgatgtgtaagaaggcagctaaggctggt
ctgtcccagtctctctttgaacgtctggtggttttgggcatccggccgatccgcctgcag
gtccagtaccgtatgcatccggccctcagtgccttcccctccaacatcttctacgagggc
tcgctgcagaatggtgttactgcagctgaccgcatcaagaaaggatttgacttccagtgg
ccacagccagacaagcccatgttcttctatgtgactcagggtcaggaggaaatcgccagt
tcaggaacctcctacctcaacaggacggaggctgcaaatgtagagaagatcaccactagg
ctgctaaaagctggagccaaacctgaccagatcggcatcatcacaccatacgagggtcag
cggtcctacttggtccagtacatgcagttcagcggctccttgcacaccaaactctatcag
caagtggaaattgccagcgtggatgcctttcaggggagagagaaggacttcatcatcctg
tcgtgtgtccgtgccaatgagcatcagggcattggctttctgaacgacccccgtcgtctc
aacgtggcactgaccagagccaagtacggggtgatcattgtgggaaaccctaaggccctc
tctaagcaaccgctgtggaacaacctgctcaacaactacaaggagcagaaggtcctggtg
gagggacctctgaacaacctgagggagagcctcatgcagttcagcaagccacgcaaactg
gtcaacacaatcaatcctggaggtcgttttatgagcactgcaatgtacgacgcccgtgag
gccctcattcctggctctgcctacgaccgcagcagtgctgctggacgtccttccaacatg
tactttcaaactcatgaccagattgggatgattggggcaggccctggtcacatggctgcc
atgaatatcccaatacccttcaacctggtgatgccgccaatgcctccgccgagcttcatg
ggtcaaaccaatggacctgctgcaggccgtggagctatgaagggtaagcctggacgtggt
ggaaggcaaaggggccgtggctctgggaaccagggtgccagtcagggcaatggaccaaac
agccaggccagtcaggatggagcatcccagtccttctcacagggcccactgacacaaggc
tatatctccatgagccagccctctcagatgagccagcccggcctctcccagccagaactc
tcccaggacagctacctgggcgacgagttcaagtcccagatcgatgtggctttgtcccag
gactcgacttaccagggtgaacgcgcataccagcatggtggggtgactggactgtcacag
tactaa
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