Betta splendens (Siamese fighting fish): 114854622
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Entry
114854622 CDS
T08231
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha isoform X1
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl04010
MAPK signaling pathway
bspl04020
Calcium signaling pathway
bspl04144
Endocytosis
bspl04510
Focal adhesion
bspl04540
Gap junction
bspl04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
114854622 (pdgfra)
04020 Calcium signaling pathway
114854622 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
114854622 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
114854622 (pdgfra)
04540 Gap junction
114854622 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
114854622 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
bspl01001
]
114854622 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
bspl04090
]
114854622 (pdgfra)
Enzymes [BR:
bspl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
114854622 (pdgfra)
Protein kinases [BR:
bspl01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
114854622 (pdgfra)
CD molecules [BR:
bspl04090
]
Proteins
114854622 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
Ig_2
ig
V-set
VEGFR1-3_N_Ig-like
VEGFR-1-like_Ig-like
C2-set_2
Haspin_kinase
Motif
Other DBs
NCBI-GeneID:
114854622
NCBI-ProteinID:
XP_029005047
UniProt:
A0A6P7MF78
LinkDB
All DBs
Position
4:complement(27659681..27673283)
Genome browser
AA seq
1472 aa
AA seq
DB search
MDGVKAYVVVGSMLVSLLPVSSGLPPPTIVSNQDEFILQPRSMFNISCTGKRNVIWAEPL
PDNALVYHGYYTATLFIDNATVANTGYYTCVYEDQGAEVESDLEDTEAGIYIFVKDPQVP
FVPETPEDLVVTASPLGAPISCRVSDPFSHVRLRRIPSGEEVMIFYDSKMGFYGRLKSGQ
YQCETTVDERTVRSAIYTVQSGEAAESFSVKVTASEETLKAGQPLSVSCDAPAGPAFHQQ
WLHPNREAVGAVQTRRTLSDRVVYTISVPEATAQDGGTYECSVTNTGSGEVRASRVAVTV
LDAEKSSFVTLDHSGILASESVSLLEETEFTILIEASPSVKVLWLKDGGALSENYYVHTK
TNHIEGNRYQSILTLRQPLEIDNGNYSIVATAGSRRAQFSFTLKVRASAAAMLPLSSSPL
LLPQRDELVVALHAPFALTCQGEARLAWTAPGDVAEHAREHGGLFVTAVTVESATAAHTG
YYTCSYAGNATAGVEGSSVYVYVPDPDVPFLPSPEPFGNHVVSENEMEMEIQCRVSDPSA
NVTLVNVDTQQPVPCAYDSRRGALGVFPGGTYICKAVVNGVEQYSSEYIVHGWSEDDIPL
TVDITAKRTALLVGDTITVACLANGPVLLEDHWKYPGKVANRGIIKVAENRKERKILYTL
TISQASTKDSGIYSCSITDVSTNESQTKELAIRVFAGEFMSVKPLFREYESAELDEVREF
RAEISSFPTARVTWLKGGVPLGDVSAEISTSLQQVSETSYVSALTLIRAKEEDSGNYTMR
VQNGNQSQDIDLMLEVKVPAAIVDMMDIHHGSAAGQSVVCITRGQPTPVVEWFVCKNIKH
CANDSSAWLPLTANSTDITFDSHFDEDNNLESQVLFGHLDNTLAVRCLARNDKAAVAREV
KLVSSGPHPELTVAAAVLVLLVIVIISLIVLVVIWKQKPRYEIRWRVIESVSPDGHEYIY
VDPMQLPYDSRWEFPRDRLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTAR
SSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHKNRENFL
SLNPEKSKKELDIFGINPADESSRSYVILSFENKGDYMDMKQADNTQYVPMLEMSNTSKY
SDIQRSDYDHPPSQKGSNAEGETDNLLSDDMNEGLTTTDLLSFTYQVAKGMEFLASKNCV
HRDLAARNVLLSQGKIVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIFDNLYTTL
SDVWSYGILLWEIFSLGGTPYPGMVVDSSFYNKIKSGYRMTKPEHAPQDVYEMMMKCWNS
EPEKRPSFMGLSDTVACLLPSSYKRHYEKVNHEFLKSDHPAVTRVCVDNDDAYIGITYKN
QGKLKDRESGFDEQRLSSDSGYIIPLPDLDPISDDEYGKRNRHSSQTSEESAIETGSSSS
TFAKREGETLEDITLLDEMCLDCSDLVEDSFL
NT seq
4419 nt
NT seq
+upstream
nt +downstream
nt
atggatggcgttaaggcgtatgtggtggtgggcagcatgttggtgtcgctccttccagtt
tcctctggactgccgccgccgactattgtctccaaccaggacgagttcatcctgcagccc
aggtccatgttcaacataagctgcaccggcaaaagaaacgttatttgggccgaaccgcta
ccggacaacgcgttggtttatcacggatactacacggccactctcttcattgacaatgcc
acagtggcgaacaccggctattacacgtgtgtgtacgaagaccagggcgctgaagtggag
agtgacctggaagacaccgaggcgggaatatatatttttgttaaagatccccaggttccg
tttgttcccgagaccccggaggacttggtggtcaccgccagcccccttggagcccccatc
tcctgccgagtgtctgaccccttctcccacgtcagactgaggcgcatccccagcggagag
gaggtgatgatcttctacgacagcaagatgggcttctatgggcgcctcaaatctggccag
taccagtgtgagaccactgtggatgagcggacggtcagaagcgccatttacaccgtgcaa
agtggggaggcggcggagtcgttcagcgtgaaggtgacggccagcgaggagacgctaaaa
gcggggcagccgctcagcgtcagctgcgacgcgcccgccggccccgcgttccatcagcag
tggctccatcccaacagagaggcagtgggcgcagttcagaccaggcggactctctccgac
cgggtcgtctacaccatcagcgtccccgaggccacagcgcaggacggcgggacctacgag
tgctccgtcaccaacaccggcagcggagaggtcagagcgagcagggtggccgtcaccgtc
ctggatgcagaaaagagttccttcgtcaccctggaccacagcgggattctggcgtcggag
tcggtcagcctcctggaggagaccgagttcactatcctgattgaagcctccccatctgtc
aaagtgctgtggctgaaggacggcggagcattgtcagaaaactactacgtccacaccaaa
acaaaccacattgaagggaatcgctatcagagtattctgacattacgacagcctctggaa
atagacaacgggaactacagcatcgtagccaccgccggctcccgccgcgctcagttctcc
ttcaccctcaaagtgagagcctccgccgccgcgatgctgccgctgtcctccagcccgctg
ctgctgccgcagagggacgagctggtggtggcgctccacgctccgttcgccctcacctgc
caaggggaggcccggctggcctggacggccccgggcgacgtggcggagcacgcgcgggag
cacggcggcctgttcgtgaccgctgtcactgtggagagcgccaccgccgcgcacaccggc
tactacacgtgctcctacgccgggaacgccaccgcgggggtggaggggagcagcgtctac
gtctatgtgccggatccagacgtccccttcctgccatcgccggagccgttcgggaaccac
gtggtgtccgagaacgagatggagatggagatccagtgccgcgtgtccgaccccagcgcc
aacgtgacgctggtgaacgtggacacccagcagccggtgccgtgcgcctacgacagcagg
cgaggcgctctgggggtcttccccggtgggacctacatctgcaaggccgtggtcaacggc
gtggagcagtacagctccgagtacatcgtccacggctggtcagaagacgacattcctctg
accgttgacataacggccaagcgaacggctctgctggtgggagacaccatcactgtggcc
tgcttggctaacggacccgtgctcctggaagaccactggaagtatcctggcaaagtggca
aaccgtggcatcataaaggtggctgagaacaggaaggagcgcaagattctttacacctta
acgatctcacaagcctccaccaaggacagcggcatctactcctgctccatcacggatgtc
tctactaatgagagccagacaaaagaactggccatcagagtgtttgccggggagttcatg
tctgtcaagccgctgttcagagagtacgaatccgcggagctggacgaggtccgagagttc
agggccgaaatcagctccttccctacagcgcgcgtcacctggctcaagggcggcgtcccg
ctgggcgacgtgagcgccgagatctccaccagcctccagcaggtcagcgagaccagctac
gtgagcgccctgaccctgatccgcgccaaggaagaggacagcggcaactacaccatgcga
gtgcagaatggaaaccagagtcaggacatcgacttaatgctggaggtcaaagtgcctgca
gccattgtggacatgatggacatccaccatgggtccgctgcaggccagtctgtggtgtgc
atcaccagagggcagcccacacctgtggtggagtggttcgtctgcaagaacatcaaacac
tgcgccaacgactcgtccgcttggctgcctctcaccgccaactccaccgacatcaccttc
gactcgcacttcgacgaggacaacaacctggagagccaggtcctgttcggtcacctggac
aacacgctggccgtgcgctgcctggcccggaacgacaaggccgccgtcgccagggaggtc
aagctggtgtccagcggcccccaccccgagctgactgtagctgctgctgtgctggtgctg
ctggtcattgtcatcatctcactcattgtcttggttgtaatctggaaacagaaaccgcgg
tatgagattcgctggagggtcatagagtctgtgagtccagatggccacgagtacatctat
gtggatcccatgcagcttccctacgattccagatgggagttccctcgtgaccggcttgtg
ctcggtcgcatcctgggctctggagctttcggcaaagtggtggagggcactgcctacgga
ctcagccgctcccagcctgtcatgaaggtggcagtaaagatgctgaaacccacagcgcgc
tccagtgagaaacaggccctgatgtctgagctgaagatcatgactcacctgggacctcat
cttaacattgttaatctgctgggagcatgcaccaaatcagggcccatctacattatcacc
gagtactgcttctacggggacctagtcaactacctgcacaagaacagggagaactttctc
agcctgaaccccgagaaaagcaaaaaagagctggacatctttgggatcaaccctgcagac
gagagcagccggagctatgtgatcctgtcctttgaaaacaaaggcgactacatggacatg
aagcaggccgacaacactcagtacgtgcccatgctggagatgagcaacacctccaagtac
tcagacatccagaggtccgactacgaccacccaccctcccagaaaggctccaacgcagag
ggcgaaacggacaacctgctgtcagacgacatgaacgagggcctcaccaccaccgacctg
ctcagctttacctaccaggtggccaaaggcatggagttcctggcttccaaaaactgtgtg
caccgggacctcgccgccaggaacgtcctcctctctcagggcaagatagtaaagatctgc
gactttggactggccagagacatcatgcatgacaacaactacgtgtccaaaggaagcacc
ttcctgccagtgaagtggatggcacccgagagtattttcgacaacctgtacaccactctc
agtgacgtgtggtcctacggcatcctcctctgggagatattctcgctaggtggcacccca
tacccaggaatggttgtcgactcgagcttctacaacaagatcaagagtggatacaggatg
accaagcccgagcatgcgcctcaggacgtgtatgagatgatgatgaagtgctggaacagt
gagccagagaagaggccgtccttcatgggtctgagtgacactgtcgcctgtttgctgccc
tccagctacaagaggcattatgagaaggtgaaccacgagttcctgaagagcgaccaccct
gctgtgactcgggtgtgcgtggacaacgacgacgcctacatcggcatcacctacaagaac
caaggcaagctgaaggaccgggagagtggcttcgacgagcagcggcttagctccgacagc
ggttacatcatccctctccctgacttggaccctatatccgacgacgaatacggcaaaaga
aacaggcacagctcgcagacgtcagaggagagcgcgatagagacgggctccagcagctcc
accttcgccaagcgggagggtgagactctggaggacatcacgctgctggacgagatgtgt
ctggactgtagcgacctggtggaggacagctttctgtga
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