Betta splendens (Siamese fighting fish): 114856402
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Entry
114856402 CDS
T08231
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl04510
Focal adhesion
bspl04512
ECM-receptor interaction
bspl04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114856402 (col2a1b)
04518 Integrin signaling
114856402 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114856402 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bspl00536
]
114856402 (col2a1b)
Glycosaminoglycan binding proteins [BR:
bspl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114856402 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
114856402
NCBI-ProteinID:
XP_029008172
UniProt:
A0A6P7MN80
LinkDB
All DBs
Position
5:14097517..14127431
Genome browser
AA seq
1491 aa
AA seq
DB search
MLSFVDSRTVLLLVATQVCLVAVVRCQEEDDQTDAFSCIQDGQRYIDKDVWKPEPCRICV
CDTGTVLCDEIVCEELKDCPKPEIPFGECCPICAADTSPPIGVPGAKGQKGEPGDITDVV
GPRGPAGPMGPPGEQGPRGARGDKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEPGEPGQT
GAMGPRGPSGPPGKPGEDGEAGKPGKSGERGPAGPQGARGFPGTPGLPGIKGHRGYSGLD
GAKGETGAVGSKGEAGAPGESGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPP
GPVGPSGASGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIN
GAKGSVGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPV
GLQGAPGPIGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPA
GASGPKGANGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGEPGKSGEKGLAGAPGLRGLPGKDGETGAAGPPGPGGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGAAGTQGLQ
GPRGLPGTPGSDGPKGAIGPAGAAGAQGPPGLQGMPGERGGAGIPGPKGDRGDLGEKGPE
GASGKDGARGLTGPIGPPGPAGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPAGFA
GPPGSDGQPGIKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDNGPPGRQGDAGLRGPAGAPGEK
GDAGEDGPPGPLGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGGAGDR
GPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGSAGIKGDRGNTGPAGAPGAPGGPGAP
GPVGPTGKQGDRGEAGAQGPAGPPGPAGARGMPGPQGPRGDKGEAGESGERGQKGHRGFT
GLQGLPGPPGQGGDQGATGPAGPSGQRGPPGPVGPAGKDGANGLPGPIGPPGPRGRSGET
GPSGPPGTPGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQASGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCN
METGESCVHPRPSNIPRKNWWSSKSKDRKHIWFGETMTGGFHFSYGDDSLAPNTAAIQMT
FLRLLSTEASQNLTYHCKNSVAYMDASTSNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED
GCTRHTGHWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttgagctttgtggattccaggactgtactgctacttgtagcaacccaagtctgtcta
gtagccgtcgtgagatgtcaagaggaggacgaccagacggacgcttttagctgtatacag
gacggacagcgctatatcgacaaggacgtgtggaaaccggagccttgtcgcatctgcgtg
tgtgacactggaaccgtcctgtgtgatgaaattgtctgcgaggaactaaaagactgcccc
aagcctgaaatcccattcggagagtgttgtcccatctgtgcagctgatacgtctccaccc
attggagtccctggagctaagggtcagaaaggcgaacccggagacattaccgatgttgta
ggaccgagaggaccagctggccccatgggccctccaggagagcaggggccccgcggagca
agaggcgacaagggagagaagggaagccctggtccccgcggcagagatggtgaacctggt
acccctggaaaccccggcccccccggacctccaggcccaaacggaccccctggacttggt
ggaaactttgctgctcagatggccggtggctttgacgagaagtccggcggcgcacagatg
ggtgtgatgcaaggaccaatgggccccatgggacccagaggaccccccggcccctccgga
gcacctggcccacaaggtttccaaggcaacccaggagagcctggagagcctggacaaact
ggtgctatgggtcctcgtggcccctctggacctcctggaaaacctggagaggatggtgaa
gctggaaaacctgggaaatctggtgagcgaggacccgctgggcctcagggagcccgtgga
ttcccagggacacctgggctgcctggcatcaagggacacagaggttattcaggactggat
ggtgcaaagggagaaactggagcggttggctctaagggtgaggctggggctcctggggag
agcggcgctcctggacccatgggacctcgtggtttgcctggagaaagaggccgacctgga
ccaagcggggctgctggagctcggggaaacgatggcttgccaggtcctgctggtcccccg
ggccctgttggtccctctggagcttcaggattcccaggttcacctggttccaagggagaa
gctggacctactggagctcgtggacctgaaggtgctcaaggacctcgtggagagtctggc
acacctggatcacctggaccttctggtgcttctggcaaccctggaactgatggcatcaat
ggagctaaaggatcagttggtgcgcctggtatcgctggtgctcctggtttccctggacct
cgtgggcctccagggcctcagggagctactggacctcttggacctaaaggaacatctgga
gacccaggtattccaggatttaagggagaggctgggcccaaaggagaaattggaccagtt
gggcttcagggagcacctgggccaataggagaagagggcaagcgaggacccaggggtgag
cccggtgctgctgggccactcggacctcctggagagagaggagctcctggtaaccgtggt
ttccctggtcaagatggtctggctggtcccaagggagcccctggtgagcgaggacccgct
ggtgccagtggacccaagggtgctaatggggacccaggccgtcctggagagtctggtttg
cctggtgccaggggcctgactggacgccctggtgacgctggtcctcaaggcaaagttgga
ccttcaggagctgctggtgaggacggacgtccaggaccccctggcccacagggagcccgc
ggacagcctggcgtcatgggcttccctggacccaagggagcaactggtgagcctggaaag
tctggtgagaaagggttggctggagctcctggtctaaggggtctgcccggcaaagatgga
gaaaccggtgctgccggaccccctggccccggcggccctgctggagagagaggagagcag
ggacagcccggtccatcaggcttccagggtctgcctggaccccctggccctcctggtgag
ggaggaaaacccggagaccagggtgttcctggagaggctggagctgctggtgctaccgga
cccagaggagagcgtggtttccccggagagagaggagcagctggcacgcagggtctgcag
ggaccgagaggtctgcctggaactcctggtagcgatggacccaagggagccattggaccc
gctggtgccgcaggagcccagggaccacctggcctgcagggtatgcctggagagagagga
ggtgccggcattcctgggcccaaaggagacagaggcgaccttggggagaaaggacctgaa
ggtgcttcaggcaaagatggcgccagaggcctcacaggtcccattggtcctcctggccct
gctggccccaacggagagaagggtgaatctggtcctgctggtccttctggggctcctggt
acccgcggtgcaccgggcgacaggggtgagaccggacctccaggacctgctggatttgct
ggacctcctggttctgatggtcagcctggaatcaagggagagcagggagaatctggacag
aagggagacgctggtgcccctggaccccaaggaccatccggtgcccctggacctgcaggt
ccaacaggtgtttctggacctaaaggcgctcgcggtgctcagggacctcctggtgccact
ggtttccctggagctgctggtcgagttggacccccaggtcccaatggtaatcctgggcct
gctggacctgctggccccccgggcaaagatggacccaagggtgtgaggggggacaatgga
cccccaggcagacagggtgatgctgggcttcgtggtcctgctggggctccgggagaaaag
ggagatgctggagaggacggtcctcctggtccgcttggtccttcaggtcctcagggtctg
gctgggcagcgcggtatcgttggtctacctggacagcgtggggagagaggattccctgga
ctgcctggtccttctggtgagcctggtaaacagggagcttctggtggggcaggagaccgt
ggaccccctggacctgttggacctcctggactcactggacctgcaggagagcctggtaga
gagggcaaccctgggtctgatgggcctcctggtagagacggttctgctggaatcaagggt
gatcgtggtaacaccggtccagctggtgctcctggtgctccaggtggtcctggtgctcct
ggcccagttggtcccactggcaaacagggagacagaggagaggctggtgcacaaggacct
gcaggacctccaggccctgctggagccaggggaatgcctggaccacaagggcctcgcggt
gacaagggtgaggcaggagagtctggcgagagaggacagaaaggacacagaggtttcact
ggtctgcagggtcttcctggacctccgggtcaaggtggagaccagggtgctaccggacct
gctggaccgtctggacagagaggaccacctggacctgttggtcccgctggaaaagatggt
gcaaatggtctgccaggacccattggtccccctggacctcgtggtcgcagtggagagact
ggtccatctggtccccctggaacccccggaccccccggtcctcctggtccccctgggcct
ggcattgacatgtctgcctttgctggtctggggcagaccgagaagtcccctgatcctctc
aggtacatgagggccgaccaggcttccggaaacctccgtcagcatgatgccgaggtcgat
gccactcttaaatctctaaacaaccaaattgagaacatccgcagccccgagggatccaag
aagaacccagctcgcacctgcagagacctgaagctctgccatcctgactggaagagcgga
gagtactggattgatcctaatcagggttgcacagttgatgcaatcaaagtcttctgcaac
atggagacaggagagtcctgtgtccatcccagaccttctaacattcctcgtaagaactgg
tggtccagcaagagcaaggaccgcaagcacatctggttcggcgaaacaatgactggagga
tttcacttcagctacggtgatgacagcctggcgcccaacactgctgccattcagatgacc
ttcctgagattgctttcaaccgaggcttctcaaaacctcacctaccactgtaagaacagc
gtggcctacatggatgcctcgacaagcaacctgaagaaggccgtgctcctgcagggctcc
aacgacgtggagatccgagctgagggcaacagccgcttcacttacagcgtgatggaggac
ggctgcacgagacacacaggacactggggcaagacagtgatcgaatacaggtcacagaag
acttctcgtctgcccattgtggacattgcccccatggatattggaggagccgatcaggag
ttcggagttgatgttggggcagtctgcttcttgtaa
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integrated database retrieval system
