Betta splendens (Siamese fighting fish): 114856816
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Entry
114856816 CDS
T08231
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
bspl
Betta splendens (Siamese fighting fish)
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bspl03009
]
114856816 (ighmbp2)
03012 Translation factors [BR:
bspl03012
]
114856816 (ighmbp2)
Enzymes [BR:
bspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
114856816 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
114856816 (ighmbp2)
Ribosome biogenesis [BR:
bspl03009
]
Eukaryotic type
Other ribosome biogenesis factors
114856816 (ighmbp2)
Translation factors [BR:
bspl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
114856816 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
DEAD
Viral_helicase1
ResIII
AAA_16
AAA_22
Helicase_RecD
nSTAND3
UvrD-helicase
Flavi_DEAD
PIF1
IstB_IS21
SLFN-g3_helicase
DnaB_C
Zot
T2SSE
PhoH
AAA
AAA_31
SRP54
AAA_25
HEM4
AAA_18
NPHP3_N
Herpes_ori_bp
ATPase
ABC_tran
AAA_33
Motif
Other DBs
NCBI-GeneID:
114856816
NCBI-ProteinID:
XP_029008415
UniProt:
A0A6P7MQC6
LinkDB
All DBs
Position
6:complement(12917554..12922215)
Genome browser
AA seq
977 aa
AA seq
DB search
MAVEQFVSKTLELLQQEREAEIEETRIWQENVSLKDLQNKGVCLLKLQIGSQSTGLYGRT
VVILEPRKYLGFTSLPSNSFGPGDIVGLYDTGGCTIASQISTGIVTRASQVSISVAFDDS
VDGLSFDTDAVYNLLKLANDVTYKRMKRALNTLSTYRNGPAANLINVLFGETKASSQSQT
NAVEFLNTNLDDSQREAVSFALSQRELAVVHGPPGTGKTTTVVEIILQAVKQGQKVLCCA
PSNVAVDNLVERLAQSKAKILRLGHPARLLESIQKHSLDAILAQSDNANIIADIRKDIDK
AFMGNKKKGGERMNIRREIGELRKELKTREAAAITQILKSADVVLSTNTGACDDGPLKFL
PAEHFDWVVIDECAQSLESSCWIALLRARKCILAGDYKQLPPTIKSQTAASKGLSLSLME
RLIQMCGDAVVRMLTVQYRMNSAIMDWASKQMYQGRLTAHGSVERHLLKDLPGVACTEET
STPLLLIDTAGCGLSEMEVPDEQSKGNQGEVDIVELHIKALTEAGVKAKDIAVIAPYNLQ
VDLLRLKLSARHPELEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAVTRA
RRHIAVVCDTQTVQNHTFLKSLIDHMTEFGEVRTAFEYINDLVPQNYTRHHKDTKASVSV
SSSTSAKKDKDQPPSKMKLGQKKSTSVRSNKETSVGSEKHTRSSALTEDEENKNRTIEIR
EQVENFLKNPGQTELQFPSSFNSHDRLLVHQIAEELGLIHKSKGEGKDRCVTVSRVLQST
PAEEPTPAKETETESSPQRQSLPQPPVDLKSLHLERMKREQQKREENAQQRKLLTSGPTQ
SKKAKGKNRMKAGACDIAAAAALDNDFDSLISAVMKADSVCAFVACKASVLTLGQLCIFC
NRQYCLSHHIPEVHGCGDKAKSHARMRISKEGVLYAGSGKKDKSMDPNKKAYLQRKLDSK
LKDMATQRKSKTKEKDS
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atggcagttgaacagtttgtgtccaagacactcgagcttctgcagcaggagagagaagct
gaaatagaagagaccagaatttggcaggagaacgtttcgctcaaagatcttcaaaataaa
ggagtttgtctgctgaaactgcagataggaagtcagtccacaggattgtatggacgcact
gttgtcatcctagagccaagaaaataccttggcttcacatctcttccaagcaacagcttc
ggtccaggtgatattgttggcttgtatgatactggtggatgcaccatcgcctcacagatc
agcacagggattgtgacgagggccagccaagtgtccataagcgtggcatttgacgattca
gtggatggactcagttttgatacagatgctgtttacaatctcttaaagttggcaaatgat
gtcacctacaaacgaatgaagcgggccttgaatacattaagtacatatagaaacgggcca
gctgccaatctgattaatgttctttttggagaaacaaaagcttcttctcagtcacagaca
aatgcagttgaattcttgaacacaaacttggatgattctcaaagagaagccgtgtccttt
gctctgtctcagagagaattggctgtggttcatggacctccaggcactggcaaaaccacc
acagtggtggagatcatcctgcaagcagtcaaacaaggccaaaaggtcctgtgctgtgcc
ccttctaatgtggctgtggataatcttgtggaaaggttagcccagtccaaggcaaagatc
ctgaggctgggtcaccctgccagactgctggagtctatacagaagcattcactcgatgcc
atcctcgctcagagtgacaatgcaaacatcatcgctgacattcgtaaagacattgataaa
gcttttatgggaaataagaagaaaggaggagagaggatgaatattagaagagaaataggg
gagctgagaaaggagttgaaaacaagggaagcagcagccataactcagatcctgaaaagt
gctgatgttgtgctatcaaccaacacgggtgcctgtgatgacgggcctctgaagttcctg
ccagcggagcattttgattgggtggtaatagacgagtgcgctcagtccctggaaagcagc
tgctggatcgcccttctcagagcgcgcaaatgcattctggctggagactacaagcagtta
ccacctacgatcaaatcacaaaccgctgcatccaaaggtttgtctctcagcttaatggag
agactcatccaaatgtgtggggacgcagtggtgcgtatgttaaccgttcagtaccgcatg
aacagcgccatcatggattgggcctccaaacagatgtaccagggcaggttgactgctcac
ggctcagtggagagacatttattaaaagatcttccaggagtcgcctgtactgaagagacc
agcactccgctcctgctgatcgacactgcaggctgcggtctgagcgagatggaggtccca
gatgagcagtccaaaggcaaccagggtgaggtggacatagttgaactgcacatcaaggcc
ttgactgaagctggagttaaagctaaagacatagctgttattgctccatacaatttacaa
gtcgaccttctgcgtctcaaactttctgcgaggcatccagagcttgagataaagtcggtg
gatggatttcagggcagagagaaagaagctgtggtgttgtcattagtgcgttccaacaga
aaaggtgaagttggttttctggcagaggacagaagaataaatgttgccgtcacacgtgca
agacgccacattgctgtagtgtgcgacacacaaactgtccagaatcacactttcctgaaa
tccctgatcgatcatatgaccgagtttggtgaggtcagaacagcgtttgagtacatcaac
gatctcgtgccacagaactacacccgacatcacaaagacacgaaggccagtgtgtcggtc
agcagctccacatcagcaaaaaaggacaaggatcagcctcccagcaagatgaagctagga
cagaaaaaatctaccagtgtgaggagcaataaggagacaagtgttggatcagagaagcac
acaaggtcatcagcactgactgaggacgaggagaacaagaacaggactatagagatcaga
gagcaggtggagaactttctaaagaaccccggtcaaactgaacttcagtttccatcgtcc
tttaactctcacgatcgcctgctggtccatcagatcgctgaggagctgggcctcattcac
aagagcaaaggtgagggcaaagacaggtgcgtcacggtctccagggtcctgcagtcaaca
ccagccgaggagccgacaccagcgaaggaaacggaaacggagagcagcccccagaggcag
tcgctgcctcaaccgcccgtagacttgaaaagtttacacttggagcgaatgaagagagag
caacagaaaagagaggaaaacgctcaacaaagaaaattactgacctccggcccaacccag
tccaagaaggccaaaggaaagaaccggatgaaggccggcgcctgtgacatcgctgccgcc
gctgcactggacaatgactttgactctctgatcagtgctgtgatgaaggccgacagcgtg
tgtgcctttgttgcgtgtaaagcatctgtgctaacgctgggacagctctgcattttttgc
aacagacaatattgtctcagtcatcacataccagaggttcacggctgcggagacaaagcc
aagtcccatgctcggatgagaataagcaaggaaggtgtcctttatgctggtagtggaaaa
aaagacaaatccatggaccccaacaagaaagcgtacctgcagagaaaactggactctaaa
ctgaaggacatggcaacacaaaggaaatcaaaaaccaaggagaaggacagttaa
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