Betta splendens (Siamese fighting fish): 114857070
Help
Entry
114857070 CDS
T08231
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X3
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114857070 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bspl03019
]
114857070 (cnot1)
Messenger RNA biogenesis [BR:
bspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114857070 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114857070 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
114857070
NCBI-ProteinID:
XP_029009000
UniProt:
A0A6P7MRZ8
LinkDB
All DBs
Position
6:complement(1088887..1112292)
Genome browser
AA seq
2376 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSTHLFTQLSKVLK
LSKVQEVIFGLALLNSSNIDLRGFAGQYIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELTKTMMESSLAEFMQEVGYGFCASVDECRNIILQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLQTVVYGIQRGLGTLEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVF
CFADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKH
CPDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIM
HSMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGIPFAFVIDLAALASRREYLKLDK
WLTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCA
GSVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSAGSLDAISPVQMDPLSAMGS
LNLGNTTTSHTSSMLSSAFSNPQSPAKAFPPLSNANPSTPFGCMDSGPLGPGICSGIGSS
LGMPTVNADPFGTRKMSTPGLNPSTFPQSKMKAYDLSQVWPEANQHFSKEIDDEANSYFQ
RIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPDKELHIT
ACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQ
HLASIGHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQVQAQSQQPGVPKAS
QPGQPSPLVTPTTSTTTTPAKTTTITRPTPSGFKKDVPPSINTTNIDTLLVATDQTERIV
EPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLY
SNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKP
ILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSMIFRPQNPWTMAIMNVLAEL
HQEHDLKLNLKFEIEVLCKNLSLDINELKPGNLLKDKEKLKNLEEQLSAPKKDAKPPDEM
ISVSTTGDFVPFPATPSTQASTTTTCTTTGPPTPQFSYHDINVYALAGLAPHININVNIP
LLQAHPQLKQCVRQSVERAVQELVHPVVERSIKIAMTTCEQIIRKDFALDSEESRMRVAA
HHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEAVARIAQDNCE
LACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKV
GGVDPKQLAVYEEFARNIPGFLPSNDLSQPTGFLAQPMKQQAWATDDVAQIYDKCMADLE
QHLHAISPALAMNPLTQALRSLLEAVALARNSRDGIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADLFHTIETLMRTCAHSRA
NAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHN
PAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQDHDV
RQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLE
LISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGTLRVLL
VLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINI
APRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINALVL
YVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSH
THYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSH
DFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7131 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctttcgctggctttgtctcaaatcagctatctggtggacaattta
acgaaaaaaaattacagagccagccagcaagaaatacagcatattgtaaatcgtcacgga
cctgaggcagacaggcatttactacgctgtctcttctcccatgtggatttcagtggcgat
ggtaaaagtagtggcaaggattttcatcagacgcagtttctgattcaagagtgtgtctca
ttgatatcaaagccaaatttcatctctactctgtgttacgccattgacaatcccctgcat
taccaaaagagtttgaagccatctacacatttattcactcaactgagtaaagttcttaag
ctcagcaaggttcaggaggtgatatttggtcttgctttacttaattccagtaatattgat
cttcgtggttttgctggacagtatatcaaacagaaacttccagacctcctgcggtcatac
gttgacgcagatctcggaggaaatcaggaaggtggcttccaagacattgcaatagaggtc
ttgcacctactgctttcccatctactgtttggccagaagggagccagtggggtaggacaa
gagcagattgacgccttcctcaagacactttgccgagattttccccaggagcgctgtcct
gtggtgcttgcaccactgctgtaccctgaaaaacgggacattctgatggacaggatcctt
ccagactcaggggaattaactaagaccatgatggagagttctcttgcagaattcatgcaa
gaagttggctatggcttctgtgctagtgtggatgagtgcagaaacataatcctccagtat
ggtgtgagggaggtgacagctagccaggtagccagagtcctgggcatgatggctcgcact
cactctggcttaactgatggcatcccactacaatcaatttctgcaccaggaagtggtatc
tggagtgatggcaaggataaaaatgatggctcacaggcacacacgtggaatgttgaggtt
cttattgatgttgtcaaagaagtgaatcccaacttaaacttcaaagaggtgacctatgag
ttggaccaccctggctttataattcgtgacagtaaaggtctacaaacagtagtgtatggc
attcagagagggttaggaacgttggaggtcttccctgttgatctcatctatcggccatgg
aaacatgcagaaggacagttgtcattcattcagcactctctgatgagcccagaagtgttc
tgctttgctgactacccttgccacactgtggccattgacatacttaaggccccaccagag
gatgacaaccgggagattgccacctggaaaagtctggacttggtggagagcctgcttagg
ctgtcagaggtgggccagtatgagcaggtgaaacagctgtttagtttcccaatcaaacac
tgcccagatatgttggtgctggcactactgcagatctccacctcgtggcacacactgcgc
catgagctcatctcaactcttatgcccatatttctgggcaaccacccaaactctgccata
atcctgcattatgcctggcatggacaggggcagtccccctccattcgtcagctaattatg
cattcaatggctgagtggtacatgagaggggagcagtatgaccaggccaaactctctcgc
atccttgatgtggcccaggacttgaagtctctgtcaatgctgctgaatggtattccattt
gcctttgttattgaccttgctgcccttgcctcgcgacgtgaatacctcaaacttgacaaa
tggcttactgacaaaatcagagagcatggggaaccttttatacaagcatgtgtgacattc
ctgaagaggcgctgtccatcaattatggggggtttggccccagacaaggaccagcccaaa
agtgcccagctgccgccagagaccttagccaccatgctggcctgcctgcagtcttgtgct
ggaagtgtgtcccaggagctgtctgaaactattctgacaatggttgctaactgcagtaac
gtcatgaataaagcccggcaaccaccaccaggggtaatgccaaagggacgtgctcctagt
gctggcagcctagatgccatctcacctgttcagatggacccactctctgccatgggttcc
ttgaacctaggcaatacgaccacctcacacacttcaagcatgctaagttcagcttttagt
aatcctcaatcccctgcaaaggcctttcctcccctctctaatgccaaccccagcacacca
tttgggtgtatggactctggtcctttgggtccaggaatttgctctggtataggttccagt
ctggggatgccaacagtgaacgcagacccttttggcacaagaaagatgagcacaccaggc
ctaaacccatctacttttccgcagagtaagatgaaggcctatgacctctctcaggtgtgg
cctgaagcaaaccagcactttagtaaggaaatagatgatgaagcaaacagttacttccag
cgcatatataaccacccacctcacccaactatgtctgtggatgaagtactagaaatgcta
caaagattcaaagattcaaccatcaagcgcgaacgagaagtttttaactgtatgcttcgg
aacttgtttgaagaatacagattctttccccaatatccagacaaagagctgcacatcact
gcctgtctctttggtggcataattgagaagggtcttgtaacctacatggccctaggcttg
gcccttcgatatgttcttgaagcattaagaaaaccttttggttcaaaaatgtattacttt
ggaattgctgccctagacaggttcaaaaacagacttaaggactaccctcaatattgtcaa
cacctagcttcaattggtcacttcttacaatttccacaccatttacaagagtatattgag
tatggccaacagtcacgggaccctccggtgaagatgcaaggctccattaccacccctgga
agtttggcactggctcaagttcaagctcagtcgcaacaacctggtgttcccaaagcctca
caaccgggtcaacccagccctcttgtcaccccaacaactagtactactaccacaccagca
aagactaccacaatcaccagaccaacacccagtggcttcaagaaggatgtgcctccctct
ataaacactaccaacattgacaccctactggtggccactgatcaaacggaaaggatagtg
gagcctccagagaatgtacaagagaagattgcttttatcttcaataacctttctcaatcc
aacatgacacagaaggttgaagagttgaaggagacagtgaaggaggaattcatgccctgg
gtgtctcagtacctggtaatgaagcgtgtcagtattgaaccaaacttccacagtctgtat
tcaaactttctggacactctaaagaacccagagtttgtcaagatggttctcaatgaaacc
tacagaaatataaaggttttactaacttctgataaagcagctgccaacttctctgatcgc
tctcttctgaaaaacctgggccactggctaggcatgattactttggctaaaaacaagcca
atcctctatacagatctagaagtcaaatctctgctactggaagcctatgtgaaaggccag
caggagctgctttatgtggttccgttcgtggccaaagttttggaatccagtgtgcgaagt
atgattttcaggcctcagaatccctggactatggccatcatgaatgttcttgctgaatta
catcaggaacatgacctcaagctcaatttgaagtttgagattgaagttctgtgtaagaac
ttgtctcttgacatcaatgaactcaagccagggaacctgctgaaggacaaagaaaagtta
aagaacctagaggagcaactgtctgcgccaaagaaggatgcaaagcctccagatgagatg
atatcagtttctacaactggagactttgttccatttccagctactccctcgactcaagct
tccaccactactacttgcacaaccaccgggccccctaccccacagttcagttaccatgac
atcaatgtttatgcattggcaggccttgccccccacattaacataaacgtcaatatccct
ttgctacaagcccatcctcagttgaagcagtgtgtacggcagtctgttgagcgggctgtc
caagaactagttcatcctgtggttgagcgctctattaaaattgcaatgacaacctgtgag
cagattatcagaaaagactttgccttggattcagaggagtcccgtatgcgtgtagctgct
caccatatgatgagaaatctgactgctgggatggccatgatcacctgccgtgagcccctg
ctcatgagcattgccactaatcttaagaacagttttgctgctgcccttagagcaccaaca
cctcagcagagggaaatgatggaggaggctgttgccagaattgctcaagacaactgtgaa
ttggcttgttgctttatacagaaaactgctgtggagaaggctggccctgaaatggataag
agactggccactgagtttgagctgagaaaacatgcacgccaagaaggacgtcgttattgt
gatcctgttgttctgacttaccaggcagaacgtatgcctgaacagattagactgaaggtg
ggaggagtggaccccaagcaactagctgtatatgaggagtttgccaggaacattccaggt
ttcttaccaagtaatgatctgtcccagcccacaggcttcttggctcagcccatgaagcaa
caggcatgggccacagacgatgtggctcagatatatgataagtgcatggcagacttggaa
cagcatcttcatgcaatctcccctgccttggccatgaatcctctgacccaggctctgcgt
agcctcttagaagctgttgcattggctaggaactccagggatggtattgctgcacttggc
cttctgcagaaggctgtcgaaggtctcttagatgctacgagcggggctgatgcagacttg
ctgcttcgctatagggagtgccacttgttggtgcttaaagccctacaagatggtcgtgcc
tatgggccacagtggtgtaataagcagatcaccagatgtctgattgaatgccgtgatgag
tataaatacaatgttgaagctgtggagcttctgatcaggaaccatcttgtgaatatgcag
cagtatgacctgcacttggcccagtctatggaaaatggactgcactacatggcagttgcg
tttgccatgcagttggtaaaactactgttggtggatgaacgcagtgtcagccatgtcaca
gaggctgacctctttcacacaattgagactttaatgaggacctgtgcacactccagagcc
aacgcaccagagggtcttccccagctgatggatgttgttcgctccaactatgaggccatg
attgacagagcccatggtggacccaacttcatgatgcactctgggatttcacaggcttca
gaatatgatgatcctccaggcctaagggagaaggcagagtacctcctgagggaatgggtc
aacctgtatcactcagctgctgctggtagggatagcaccaaggccttttctgcctttgtt
ggacagatgcaccaacaaggtattctcaagacagatgacctgattacaaggttctttcgg
ctgtgcacagaaatgtgtgtagaaataagctatagagcacaagctgagcagcagcacaat
ccagctgccagcgcagccatcatccgagctaagtgttaccacaacctggatgcatttgtt
aggcttatagcccttctggtcaaacactctggagaagccaccaacaccgtgacaaaaatc
aacctcctcaacaaggtgttgggcatcgtagttggggtattgatccaggaccatgatgtc
cggcagacagagttccagcagctcccatatcaccgcattttcattatgctgctgttggaa
cttaatgcccctgaacatgtccttgagaccattaatttccagactctcaccgccttctgc
aatacctttcacatcctgagacctaccaaagcacctggctttgtgtacgcctggctggaa
cttatctcccatcgtattttcattgccaggatgctagcgcacacaccacagcaaaaggga
tggcctatgtatgcgcagctgctgattgatctcttcaaatacctggcccctttcctgagg
aatgtagaacttaacaaacctatgcaaatcctctacaagggtacactgagagtgctattg
gtcctgctccatgatttcccagagttcctgtgtgactatcattatggcttctgtgatgtt
atcccaccaaattgcattcagctacgcaacctcatcctcagtgcctttccacgcaatatg
aggctgcccgacccttttacacctaatcttaaggtagacatgctgagtgaaatcaacatc
gctccccgtattctcaccaactttactggcgttatgccctcccagttcaagaaggatctg
gactcatacctcaagacccgctcacctgtcacttttctgtctgagctacgcagcaacctg
caggtatctaatgagccaggaaatcgctacaacatccagctgattaatgctctagtgctg
tatgtaggcacacaagctattgctcacatccacaataagggcagcaccccctctatgagc
acgatcactcactcggcccacatggacatcttccagaacctggctgtggacctggatact
gaaggtcgttacttgttcttgaatgcaatcgcaaatcagctgcgttaccccaacagccac
acacactacttcagctgcaccatgctctatttgtttgccgaggccaacacagaggccatc
caggaacagatcacccgggttctattggagaggctgatagtgaacaggccacatccttgg
ggtcttctgatcaccttcattgagctgatcaagaatcctgcctttaagttttggagtcat
gactttgtgcactgtgcccctgaaatcgaaaagctgttccagtcagtagctcagtgctgc
atgggacaaaaacaagcccagcaagtgatggagggcaccggtgccagttag
DBGET
integrated database retrieval system
