Betta splendens (Siamese fighting fish): 114859878
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Entry
114859878 CDS
T08231
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114859878 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bspl03041
]
114859878 (ddx42)
Enzymes [BR:
bspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114859878 (ddx42)
Spliceosome [BR:
bspl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
114859878 (ddx42)
Complex B
114859878 (ddx42)
Complex C
U2 SnRNP specific factors
114859878 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
CARF-assoc_HTH
Motif
Other DBs
NCBI-GeneID:
114859878
NCBI-ProteinID:
XP_029013762
UniProt:
A0A6P7N370
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All DBs
Position
8:11081655..11088385
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AA seq
906 aa
AA seq
DB search
MNWNKGGPGVKRGFGFGGFALAGKKEESPLPQKSHTTFGPTGSGGGYGKGQQLPSFYKIG
TKRANFDEENAYFEDDEEESSSTVDLPYIPAENSPTRQQMRSGGGSDSEDDPLDAFMAEV
ENQAAKDMKKLEEKEKKIDKGIRDDIEEEDEQEAYFRYMAENPTAGLTQEEEEENVDYDS
DGNPIASTTKKIIMPLPPIDHSEIDYPPFEKNFYNEHEELSSLTGTQVIELRHKLNLRVS
GAAPPKPCTSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGSGKT
AAFIWPMLVHIMDQKELETGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRSVAVYGGG
SMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEYQVRSI
ASHVRPDRQTLLFSATFRKKIERLARDILMDPIRVVQGDIGEANEDVTQVVEMLPSGTDK
WGWLTRRLVEFTSSGSVLIFVTKKANCEELATNLNQEGYSLGLLHGDMDQSERNKVISDF
KKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTN
KDTSFAGDLVRNLEGANQGVSKELMDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGYRERP
GLGSDSSERSSSSSSLSSTSGFEGYTKPTTGAMGDRMSAMKQAFQAQYKSHFVAASSGPP
KLSSKSNSTSGWTSAGSLSSIPTEPANGSERSHGITMAMAGFTSAGSLSSVPTSLTSPQH
NYTPPAPPTQRDSSQDRHGEDRGHHGDSHHRRSDRSDRHSSDDRYRDRDHHGDRDRDRDR
DRHGDRDRHSSSRHSDSRNGEGSRRDRDDRRSDKDGGDRGSGEGRDRDDSFAVPEPPKRR
KSRWDN
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaaaggcggtccgggtgtaaagcgagggtttggatttggaggatttgcc
cttgcaggaaagaaagaggaatctcccctgccacagaaatctcacacaacattcggtccc
acaggatccggtgggggatatgggaaaggccaacagctcccatcattctataaaataggg
acaaaaagagctaattttgatgaggaaaatgcttattttgaggatgatgaagaggagtcc
agctccactgtggacctaccttacatcccagctgaaaactctcctacccgtcagcagatg
cggtctggtggcggctcagatagtgaggatgacccactggatgccttcatggcagaggtg
gagaaccaagcagctaaagacatgaagaaactagaggaaaaggagaaaaagatagacaag
ggtattcgtgatgacattgaagaagaagatgaacaagaagcctacttccgctacatggct
gagaatcccacagcagggttgacccaggaggaagaggaggagaatgtagactatgacagt
gatgggaatccaattgcctccaccaccaaaaagatcatcatgccgctcccacctattgac
cactctgagattgattacccaccatttgagaaaaacttttataatgagcacgaggagctc
agcagcctaactggcacacaagtgatagaattacggcacaaactcaacttgagggtatct
ggtgctgctcccccgaaaccgtgtaccagttttgcccactttggctttgatgagcagctc
atgcaccagattcgcaaatctgagtacactcagcctacaccaattcaatgccagggtgtt
cctatagctctgtccgggcgtgacatgattggtatcgcaaaaactggcagtggcaaaact
gcagcttttatttggccaatgctggttcatattatggaccaaaaagagctggagactgga
gaaggacccatcgctgttattgtgtgtcccaccagagaactttgtcagcagatccatgca
gagtgtaagcgttttgggaaagcctactcgctgcgttctgtggcagtttacggaggtggc
agcatgtgggagcaggccaaagctctacaggagggagcagagatcgtggtgtgcactccg
ggtcgtctcattgaccatgtcaaaaaaaaggccacatccctgcagagggtgacgtacctg
gtgtttgatgaggcagatcgcatgtttgatatgggctttgaataccaggttcgatctatt
gctagccatgtccgtccagacagacagactcttttattcagtgctactttccgaaagaag
atagaaaggctggccagagacattttgatggaccctattcgtgtggtgcaaggagacatt
ggagaggccaatgaggatgtgacccaggtggtggagatgctgcccagcggaacagataaa
tggggctggctgacacggcggcttgttgagttcacctcctctggctccgtcctcatcttt
gtcaccaagaaggcaaactgtgaggaactagccactaacctaaaccaggagggatacagc
ctgggccttctgcacggagacatggaccagagtgagaggaacaaggtcatcagtgacttc
aagaagaagaatttgcctgttctggtggccactgatgtagctgctcgtggcctggacatc
ccatctattcgcacagtggtgaactacgacgtggcgcgagacatcgatacgcacacacac
aggattggtcgaactggtcgtgctggagagaaaggtgtggcatatactcttctcaccaac
aaagacacctcatttgctggggatcttgtgagaaatttggagggtgcaaaccagggcgtt
tctaaagagctgatggatttagccatgcagaatccatggtttaggaaatccagattcaaa
gggggtaaaggaaagaagctcaatattggcggtggtggacttggttacagagagagacca
ggcctggggtctgacagttctgaacgcagcagcagcagcagcagtttgtcttccactagt
ggcttcgagggctataccaaaccaaccactggggcgatgggagatcgcatgtctgcaatg
aaacaagcctttcaggctcagtataagagccactttgtggctgcgtccagtggtcctcca
aaactcagcagcaagtctaacagcacatcgggctggaccagtgctggcagcctaagctct
ataccaacagagcctgccaatggatcagaacggtcccatggtatcaccatggccatggct
ggttttaccagtgctggttctctgagctcggtgcccaccagtttaactagtccacagcac
aactacactccacctgcacctcccacacagagagacagttcgcaggacagacatggagag
gaccgggggcatcatggagacagtcaccaccggcgcagcgacagaagtgatcggcacagt
agcgatgaccgttacagagatcgggatcaccatggagaccgtgaccgggatcgggatcgc
gaccgccacggagaccgggatcgtcatagtagcagccgtcacagcgacagtcgtaacgga
gaaggaagcaggagagacagagatgataggaggagtgataaggatgggggagacaggggg
agtggggaggggagggacagagatgatagctttgcagtccctgaaccaccaaagcgtaga
aagagcaggtgggacaactaa
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