Betta splendens (Siamese fighting fish): 114860521
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Entry
114860521 CDS
T08231
Symbol
col5a3a
Name
(RefSeq) collagen, type V, alpha 3a isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
114860521 (col5a3a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bspl00536
]
114860521 (col5a3a)
Glycosaminoglycan binding proteins [BR:
bspl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114860521 (col5a3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Pns11_12
Motif
Other DBs
NCBI-GeneID:
114860521
NCBI-ProteinID:
XP_029015013
UniProt:
A0A6P7N9M1
LinkDB
All DBs
Position
8:7222834..7263690
Genome browser
AA seq
1877 aa
AA seq
DB search
MEHLSRSRSRRRIPLWLCILLHLTTSQAADPIDVLRVLELSENMEGVSLEAGLCTSRRGT
EETDLAYKIDKKIQLSAPTKQLFPESSFPENFSLMTTVRAKKDAQFFLLSVYDDQGVQQL
GLEVGRSPVFLYEDQHGQPTPEQYPTFKKVNLADGKWHRIAYSVQDKTVTLYLDCQRVET
LELLRGDHAAVSTGGVTVFGTRLLDEDVFEGDIQQLLIVEEPHAAANYCEIYIPDCDSAL
PYNTQVLSAKQQESPRLRSDALMQRDQPDEPKVVSGSDSKGKKNKKNRNKGTKGKGKRKG
KGKGKKASRKKKHEDEALEDGFLRVSTAAPEHLHQEPLMTTELPDIMSTLESVIPTDVLD
KTLIEMPTHEPDFTSEAPTVVPSALPEWVVTEEEDKSVKEPVVEEYGDDLNKDLYDDLGV
STLTSGPNVTESEIFEYEDHKNDTDSEYEEYEIYEDAFDFAERDRAETWNGEASFRAEKG
QKGERAVIEPGTLVQGPPGARGPEGLPGPAGPTGPPGPRGDPGEVGPQGRPGLAGADGIP
GPPGTLLMLPFQYGGDSQKGPVVSPQQAQAQAILEQAKLSLKGPPGPLGLTGRPGPVGLP
GPSGLKGDRGDSGPSGPRGLPGPPGINGKPGKRGRAGVDGGRGAPGETGSKGDRGFDGLP
GLPGNKGHKGDRGRPGPLGPAGEPGDKGPDGPLGPRGQPGEPGPRGLVGPRGTPGPPGHQ
GISGTDGVQGSKGNPGPSGEIGPPGQQGNPGPQGLLGPQGPIGLPGEKGPQGKQGLQGLP
GIDGPPGHPGREGPPGEKGIQGLPGAQGPVGYPGTRGVKGADGVRGLKGSKGEKGEDGFP
GSKGDMGIKGDRGDNGVTGARGEDGPEGPKGQSGPLGDAGQPGIAGEKGKLGVPGLPGYP
GRQGPKGSLGFPGVAGLTGEKGRRGPAGQPGPGGQRGSNGARGGRGAKGPTGKPGDKGSA
GHDGPPGSPGEQGPQGAQGRNGETGSKGPNGPPGKDGLPGHPGQRGEPGFQGKNGPPGPP
GVVGPQGKSGETGPTGDRGHPGSPGPPGEHGLPGAAGKEGAKGDPGPPGAPGKSGPTGLQ
GFRGSRGTPGGMGPAGLKGGEGLPGIAGTTGATGERGPAGPAGAIGQPGRAGGVGPAGPM
GEKGEPGEKGFFGPAGHDGEQGPVGLPGAAGPPGPPGEDGDKGETGGPGQKGSKGDKGEA
GPPGPTGSQGPVGQPGPLGADGEPGPRGQQGMNGVKGDEGPRGFKGASGPSGLQGMPGPS
GEKGESGHVGTMGPPGQHGPRGPPGPIGGEGPPGTSGGVGQPGVVGEKGEDGEAGDPGPV
GEPGLVGAKGDVGEKGDTGPPGAAGPPGSRGAPGEDGPKGIIGPIGFPGDSGPSGEAGVN
GVDGVPGPKGDNGEAGKAGPPGASGEPGPTGPPGRRGHVGAAGKEGKQGMKGAKGIMGNL
GQVGKTGPVGPQGQPGRSGPEGFRGIPGPAGEQGLNGPPGQTGPPGPIGPPGLPGLKGDP
GVKGDKGHGGLIGLIGPPGDFGEKGDRGLPGPQGAQGTKGDEGVAGPLGPTGPPGPPGLS
GAAGEKGTKGDSGSVGARGDPGPAGPPGAPGPPATIVEPLPIREGGRKKRRHSSRAESAS
QFREGGVDLEADEFLQGDQALEEPEGMEEVFATLSSMKTEVEQMRRPLGTFESPARTCKE
LMMVQPHYKDGDYWLDPNQGCNRDSIKVYCNFTADGETCLDPDKRIEMVKLAAWNKEKPG
SWYSQYRKGKQFSYIDKDGNPVHVVQLTFLKLLSATAKQSFTYTCQNSAGWFDSTSRSYQ
HALRFRGSNDEELTQAKNPFVNAVHDGCQFRKGQERTVLEIDSPSAEILPIIDVAPIDFG
NSNQKFGFQVGRVCFTG
NT seq
5634 nt
NT seq
+upstream
nt +downstream
nt
atggagcatttatcaaggagcaggtcgcgcaggagaataccactgtggctttgtattctg
cttcacctaacgacatcacaagctgctgatcccattgatgttctgcgagtgctggagctg
tcagagaacatggagggggtgtccttggaggctggtctctgcaccagcaggaggggcaca
gaggaaacagatctggcctacaagatagacaaaaagatccagctcagtgctcccaccaaa
cagctcttccctgagtcgagctttccggagaacttctccctgatgacaacggtgagggcc
aaaaaggacgcccagttcttcctgctgtcagtgtatgacgaccagggggtgcagcaactg
ggcctcgaggtgggacgttcacccgtcttcctctacgaggaccaacacgggcagcccaca
ccggaacagtaccccaccttcaagaaggtcaacctggcagatggaaaatggcacaggata
gcctacagcgtgcaggacaagaccgtcaccctctacctggactgtcagagggtggagacc
ctggagctgctgcgaggagaccatgctgccgtcagcacaggcggcgttaccgtgtttggc
acacgcctgctggatgaagacgtatttgaaggggatattcagcagctactgattgtggag
gagcctcacgctgctgctaactactgtgagatctacatcccagactgtgactccgctttg
ccctacaacacccaagtcctatcagccaagcagcaggagagcccccgactgcgctctgat
gcgttgatgcaacgtgaccagcccgatgaaccaaaggtggtctccggtagcgacagcaaa
ggcaaaaagaacaaaaagaatcggaacaagggcacgaaaggcaaaggcaagcgcaaaggt
aaaggcaaggggaagaaggcgtccaggaagaaaaagcatgaagacgaggctctggaagat
gggttcctccgagtatccacagcagcacctgagcatctgcaccaggaaccactcatgact
acggagctgcctgacattatgagcacactagaaagtgttattcccactgacgtcctcgac
aagaccctcatagagatgcccacgcacgaacctgatttcacaagcgaggcgcccaccgtg
gtacccagtgctttgccagaatgggtggttactgaggaggaggacaagtcagtgaaggag
ccagtggtggaggagtatggcgatgaccttaacaaagacctttatgatgatcttggtgtt
tccacgttaacgtcgggcccaaatgttacggaaagcgagattttcgaatatgaagatcac
aagaacgacacagactcagagtacgaggagtatgaaatatacgaggatgcctttgacttt
gcagagcgcgatcgagcggagacgtggaacggagaggctagtttcagagcagagaaaggc
cagaaaggagagcgagctgttatcgaaccaggcacattagtgcaaggacccccaggtgca
cgaggtccagaggggcttcctggcccagctggaccaactggacctccaggaccgaggggg
gatcctggtgaagtgggtccccagggacgtcctggactcgctggggctgatgggattcca
ggtcctccgggaacactgttgatgctgcctttccaatatggaggtgattcccagaaagga
ccagtggtgtccccccagcaggcgcaggcacaagccatcctggagcaagccaagctgtca
ctgaagggacctccaggcccgttgggtcttacaggacgaccgggcccagtgggtcttcct
ggtcccagtgggttgaaaggagacagaggagacagtggcccttctggaccacgagggttg
ccaggtcctcctggaataaatggaaaacctggaaagaggggacgtgcaggagtggacgga
ggtcgcggagctccaggtgaaaccggctctaagggggacaggggctttgacggtctgcca
ggtctcccaggaaacaagggacacaaaggggacagaggaaggcctggtcctctagggccg
gctggagagccaggagacaagggacctgatggacctctggggccaagagggcaaccaggc
gaacctggtcctaggggtcttgtcgggccaagagggacacctggtccacccggccatcag
ggtattagtggaactgatggagtacaagggtcaaagggtaacccgggcccatctggagaa
atagggcctcctggtcaacagggaaacccaggaccacagggtttgcttggtcctcagggt
cccatcggactgccaggagagaagggtccccaggggaaacaaggattgcagggactgcca
ggcattgatgggcctcctggacatccgggaagagaaggccccccaggagagaaaggcatc
caaggtttgccaggtgctcagggaccagttgggtacccagggacccgtggagtcaaggga
gcagatggtgtcaggggtctaaaaggaagcaaaggagagaagggagaagatggttttcct
gggtccaaaggtgacatgggcatcaaaggagacaggggcgataacggagttacaggtgct
cgaggagaggatgggccagaagggccgaagggccaatcaggacccttaggagatgcaggc
caacctgggatagctggcgagaagggtaaacttggcgtgcctggattgcctggataccca
ggaaggcagggtcctaagggatcacttggcttccctggcgtagctgggctcacaggagaa
aaaggacgaaggggtccagctggtcagccagggcctgggggccaaagaggttctaatgga
gctcgaggtggcagaggagcaaaggggcccactggaaagcctggagacaagggttccgca
ggacacgatggtcctccagggtcccctggagaacagggcccccaaggggcacaaggaaga
aatggtgaaacaggatctaaagggcctaatggtccaccaggaaaagatggattaccaggt
cacccaggccagagaggagagccaggctttcaaggcaagaatggcccacccggcccccca
ggtgttgtaggaccccagggaaaatctggtgaaacaggaccaaccggtgatagaggacac
ccaggttcgccaggaccacctggagagcatggtttgccaggagctgctggaaaagagggt
gccaagggagacccaggtcctccaggggccccaggaaaaagtggccccactggacttcaa
ggcttcagaggcagcagagggacccctggtggaatgggtcctgcaggtctaaaaggagga
gagggcctacctggcattgcgggaactactggtgccactggggagaggggccctgcaggg
ccggctggtgctattggacagcctggacgagctggtggcgtaggtcctgctgggccgatg
ggagagaaaggcgagccaggagagaaggggttttttgggccagctgggcatgatggggaa
caggggcctgtgggactgccaggggctgcaggacctcctgggcctccaggagaagatgga
gacaagggggagacaggaggaccaggacagaaaggaagcaaaggagacaaaggagaagct
ggaccaccaggacccactggaagtcagggacctgttggacagcccggaccactaggtgca
gatggtgagccaggtcctcgtgggcagcagggaatgaatggtgtgaaaggagacgaagga
cccagaggctttaagggggcatctggaccttctgggctacaaggaatgccaggaccatcg
ggggaaaaaggagaaagtgggcatgttggaacaatgggaccaccaggacagcatggtcca
agaggccctccaggaccaattggtggagagggtccacctggaacttctggtggagttggg
cagcctggagttgttggggagaagggtgaagatggagaagcaggagaccctgggccggtt
ggtgagcctggtcttgtcggtgctaaaggtgatgtgggagagaagggtgatactgggcct
ccaggggctgctgggcctcctggaagcagaggagctccaggagaagatggacccaaaggc
attattggccctattggattccctggagattcaggaccttcgggggaagctggcgtcaat
ggagtggatggtgtaccagggcctaaaggagataatggagaagctggcaaagcagggcct
ccaggagcctcgggagagccaggacctacaggaccacctggacgacgaggtcatgtaggt
gctgcaggaaaagaaggaaaacaagggatgaagggagccaaggggataatgggaaacctt
ggccaagtggggaagacaggtccagttggaccacaaggacaaccagggagatctggccca
gaaggttttcgaggcatcccaggacctgcaggagaacaagggctaaatgggccaccagga
caaactggaccaccaggaccaataggaccaccaggacttccaggactaaaaggagaccct
ggagtgaagggagataaaggtcacggtgggttgattggtcttattggccccccaggagat
tttggtgagaagggagacagaggacttccaggaccccaaggtgcacaagggactaaagga
gatgagggtgtggccggtccactcggtcccactggcccaccagggccacctggactgtca
ggtgcagctggtgagaagggaacaaagggagacagtggttctgttggtgccagaggagat
ccaggtcctgctggtcccccaggagcccccggaccccctgcaacaatagtggaacccctg
cctatcagggaggggggacgaaagaagcgaaggcactccagtcgggcggaaagtgcatcc
caattcagggaggggggtgtggatctggaagcggatgagttcctgcagggggatcaggcc
ttagaggaaccagagggaatggaggaagtctttgctaccctctcgtctatgaaaacagag
gtagagcagatgaggaggccgctgggaaccttcgagagccctgcccggacctgcaaagag
ctgatgatggttcagcctcactacaaagatggagactactggttggatcctaaccagggc
tgtaacagagactccatcaaggtctactgtaacttcacagctgatggagagacctgtctt
gaccctgacaagaggattgagatggtgaaattagcagcctggaacaaagagaagccagga
agctggtacagccaatacaggaaaggcaagcagttctcctacatagacaaggatgggaat
cctgtacatgtagttcagctgaccttcctgaaactactgagtgccacagccaagcagagc
ttcacctacacctgccagaactccgctggttggttcgacagcacctcccgctcctaccag
cacgccctccgcttccggggcagcaatgatgaggagctgacacaagccaaaaaccccttt
gtcaatgcagtgcatgacggatgccagttccgcaaaggtcaagaaaggactgttctcgag
atcgactccccctcagcggagattcttcctataatagatgtggctccgatcgactttggc
aacagcaaccaaaagtttggattccaagttggacgagtatgcttcactggttag
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