KEGG   Betta splendens (Siamese fighting fish): 114860746
Entry
114860746         CDS       T08231                                 
Symbol
thoc6
Name
(RefSeq) THO complex subunit 6 homolog isoform X1
  KO
K13175  THO complex subunit 6
Organism
bspl  Betta splendens (Siamese fighting fish)
Pathway
bspl03013  Nucleocytoplasmic transport
bspl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bspl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    114860746 (thoc6)
  09122 Translation
   03013 Nucleocytoplasmic transport
    114860746 (thoc6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bspl03019]
    114860746 (thoc6)
   03041 Spliceosome [BR:bspl03041]
    114860746 (thoc6)
Messenger RNA biogenesis [BR:bspl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     114860746 (thoc6)
Spliceosome [BR:bspl03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    114860746 (thoc6)
SSDB
Motif
Pfam: WD40_WDHD1_1st WD40 Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz ANAPC4_WD40 WDR55 Beta-prop_EML_2 Beta-prop_EML Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_TEP1_2nd NBCH_WD40 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd Beta-prop_SCAP Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_IP5PC_F Beta-prop_IFT140_1st Beta-prop_NOL10_N Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd Beta-prop_ACSF4 WDR54 Beta-prop_WDR75_1st Beta-prop_WDR41 Beta-prop_NUP159_NUP214 Beta-prop_HPS5 WDR90_beta-prop_4th Beta-prop_Vps41 Beta-prop_TEP1_C WD40_like Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 114860746
NCBI-ProteinID: XP_029015393
UniProt: A0A6P7NAR7
LinkDB
Position
8:complement(13264689..13270806)
AA seq 323 aa
MGPVELLHMSVFSLSYSPCGRFLAAGNNYGEIALFSLSAALSPDATSQSQKPVLTFTAHE
GPIFSLISTDCHLLSAGNGEISAWSWTELIKKNVKPLWTRRPNYKSSLEIPEINSMIINP
RDNSLVVGAGDNNIHILDMEHGEFKSVLQGHSDYVHCVSVREREGEILSGGEDGAVRIWD
SRTGQSVHCIEVYKYEDCARPQYGKWISCVTTDSDWMLCSGGPALSLWHLRSLSPTSVFP
LTGCQRQATFYQDKILAVGEGPYVSHCLLGGKVKAEIPCTSQSLNTLQLNTNSTEHRVLT
VGGSSDHIDVFTNLSYKAFSLSF
NT seq 972 nt   +upstreamnt  +downstreamnt
atgggtccagttgagctgctccacatgtccgttttctctctgagttattctccctgtggt
cgattcctggccgctggaaacaactacggagaaattgctctcttcagcctttcagcagct
ctgagtccagatgcaacctctcagagtcagaaacctgtcctaacattcactgctcacgaa
ggtcccatcttctccctgatttccactgactgtcacctcctgagtgctggaaatggagag
atcagtgcctggagctggactgaacttataaagaagaacgttaaacctttgtggacaaga
cggcccaactacaaatccagcttagagatcccagagatcaactctatgatcattaaccct
agagacaacagtcttgtagtcggcgctggtgacaacaacattcacatcttggacatggaa
catggagaattcaagtctgtccttcagggtcattcggactacgttcactgtgtcagtgtg
cgagagagggagggagagattctgtcagggggggaggatggagcggtgaggatctgggac
agcagaacgggtcagtctgttcactgcattgaggtctataagtacgaggactgtgcacgc
cctcaatacggtaaatggatcagctgtgtgaccacagactctgactggatgttgtgcagt
ggaggcccagctctgtctctgtggcaccttcgctctctgtctccaacctcagtcttccct
ctgacaggctgccagagacaggctaccttctaccaggacaagatcttagctgtaggtgaa
ggtccttatgtgtcccactgtttgttgggtggaaaggtcaaagccgagatcccctgcaca
tcacagagcctcaacaccctgcagctcaacacaaacagcactgagcatcgggtgctgaca
gttggaggcagcagcgatcacatcgacgtgttcaccaacctgtcgtacaaagcgttttca
ctcagcttttga

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