Betta splendens (Siamese fighting fish): 114862520
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Entry
114862520 CDS
T08231
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog isoform X1
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bspl
Betta splendens (Siamese fighting fish)
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bspl03016
]
114862520 (rtcb)
Enzymes [BR:
bspl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
114862520 (rtcb)
Transfer RNA biogenesis [BR:
bspl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
114862520 (rtcb)
Prokaryotic type
tRNA splicing ligases
114862520 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
114862520
NCBI-ProteinID:
XP_029018768
UniProt:
A0A6P7NLB1
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All DBs
Position
9:13083975..13087976
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLEKLNSNSWRIKKGFVPNMRVEGVFYVNDSLEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIIHRSIGLPDVHSGYGFAIGNMAAFDMDDPDAVVSPGGVGFDI
NCGVRLLRTNLDERDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFGTTPDDLDMHVIYDVSHNIAKVEE
HVVDGKQRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaagttataacgatgagctgcagtacctagaaaaactcaacagcaacagctgg
aggattaagaagggcttcgtcccaaacatgcgggtggaaggagttttctacgttaacgac
tccttggagaagctgatgtttgaggagctacgtaacgcctgcagaggaggaggtgtcggc
ggattccttccagccatgaaacagataggaaatgtagcagcgctgcccgggatcatacat
agatccattggcctcccagacgtccactctggatacggatttgccattggaaacatggca
gccttcgacatggatgaccccgatgctgtggtgtctccaggcggtgttggttttgacata
aactgtggcgtccgtttgctgcgtaccaatctggacgagagagacgtccagccagtgaag
gagcagttggcccagtctctgttcgaccacatcccagtgggagtcggctccaaaggagtc
atcccaatgggggccaaggacctggaggaggctctggagatgggggtggactggtctctg
cgggagggctacgcctgggctgaggataaggagcactgtgaggagtatggcaggatgcta
caggccgaccccaacaaagtgtcctccaaggccaagaagagaggcctgccacagctgggg
actctgggagcaggaaaccactacgctgagatccaggtggtggatgagatctacaatgac
tatgccgctaaaaagatgggcatcgaccacaaaggtcaggtgtgtgtcatgatccacagc
gggagcagaggcctcggacaccaggtcgccacagatgctcttgttgccatggagaaggcc
atgaagagggataaaatcacagtaaacgatcggcagctggcctgcgctcgcatcacatca
caggaagggcaggactacctgaaaggcatggctgctgcaggaaactacgcctgggtcaac
cgctcgtccatgaccttcctcacccgacaggcgttctccaaagtatttggtacaacgcca
gacgacctggacatgcacgttatctatgacgtctcccacaacatcgccaaagtggaggag
cacgtggtggatggcaaacagcggactttgctcgttcaccgcaaaggctccacccgagcg
ttcccgccccaccaccccctcatccccgtggactaccagctcacaggtcagccagtgctg
atcggaggaacgatgggaacctgcagctacgtcctcactgggaccgaacaaggaatgacg
gaaacattcggcaccacctgtcacggagcgggccgagctctgtctcgagcaaagtcccgc
aggaatttggactttcaggacgtcctggacaaactggctgacatgggaattgccatcaga
gtggcttcgcccaaactggtcatggaggaggctcctgaatcgtacaagaatgtgacagat
gtcgttaacacgtgtcacgatgctggaatcagtaagaaagccattaaactgaggccgatc
gctgtgattaaaggctga
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