Betta splendens (Siamese fighting fish): 114864694
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Entry
114864694 CDS
T08231
Symbol
nxf1a
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl03008
Ribosome biogenesis in eukaryotes
bspl03013
Nucleocytoplasmic transport
bspl03015
mRNA surveillance pathway
bspl05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114864694 (nxf1a)
03015 mRNA surveillance pathway
114864694 (nxf1a)
03008 Ribosome biogenesis in eukaryotes
114864694 (nxf1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
114864694 (nxf1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bspl03019
]
114864694 (nxf1a)
03009 Ribosome biogenesis [BR:
bspl03009
]
114864694 (nxf1a)
Messenger RNA biogenesis [BR:
bspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
114864694 (nxf1a)
mRNA cycle factors
Stress granule specific factors
114864694 (nxf1a)
Ribosome biogenesis [BR:
bspl03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
114864694 (nxf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
LRR_9
LRR_8
UBA_8
Motif
Other DBs
NCBI-GeneID:
114864694
NCBI-ProteinID:
XP_029021448
UniProt:
A0A6P7NNL1
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All DBs
Position
10:complement(12273018..12282199)
Genome browser
AA seq
671 aa
AA seq
DB search
MARSTMFRRVYPNLVVSSVLTRDRGSFIVRREVRTTDLLNPGEHDDRTAPQFRNRKGRGS
HKGRSYDRSRRDRQRGSHSGGFGGPGPRSRLDDADGDVTMSDSSQDNSAQHRFTPYGRPF
RKGDGRFDRDRRQGKGGGGRGGGGGGGGFRADRLGGGGGGVGGKNRSGWYKVTIPHGRKY
DKKWLLTALQNICSVPFTPVQYHVDHNRVHFFIDDSPAASALHKCSHKITDTDGYKVEVH
VNDSAPPSFLLADLKPEHVEHLKQCMAKRFDGSQQALDLNNIRTDPDLVSHNIEIVLNWK
TNMEAVIKIIEENIPELTCLNLSNNRIHKLDELAGLVNKVPNLKTLNLSHNELKSDRELD
KVKGLKLVELWLNRNPLCNHFKDQPSYISAVRQRFPRLLKLDGHDLPPPIGFDVETPTTI
PPCKGSCFGSDEIKALILRFLQQFYSIYDSGNRQPLLDAYHDGASLSLTTPYSTQNPSRS
SLGEYHKDSRNLKRIKDSTMRFRLLKHTRLNVVAFLNELPKTQHDIASFTVDVNTYTNTL
LSFTVSGVFKEVAVDGKSRDSTMAFSRVFITVPAGNSGLCIVNDQLFIRMATTEEIRRAF
VAPAPTPSSSPVPTLTSQQQEMLTAFSQKSGMNLEWSQKCLQDNEWDFNRAAQIFTQLKS
EGQIPDVAFLK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggcccgttccaccatgtttcggagagtctatcccaatctggtggtgagcagtgtgctg
actagagaccgaggcagcttcattgtgagaagagaggtcagaactacagatttgttgaac
ccaggagagcacgatgatagaaccgcaccacagtttcgcaatcgtaaaggcaggggatcc
cacaagggtcggtcgtatgataggtcccgcagagaccgccaacggggaagccactcagga
ggctttggagggcccggacctcggtctaggcttgatgatgcagatggagatgtaaccatg
agcgacagctctcaggacaacagcgcacagcacagattcactccatatggtagacccttt
cgcaaaggagatggacgatttgacagagacagacgacaaggcaaagggggtggaggtaga
ggaggcggaggaggaggtggtggcttcagagcagacagacttggtggaggcggcggtgga
gttggagggaagaaccggtcaggctggtacaaagtaacgataccacatgggagaaaatac
gacaagaaatggctactgacagcacttcagaacatttgttccgttccattcacacctgta
cagtaccatgtggatcacaaccgggtccatttctttattgatgattctcctgctgccagt
gctttgcacaaatgttctcacaagatcacagacacagatggttacaaagtggaagtgcac
gttaacgacagtgctccaccttctttccttctggctgacctaaagcctgaacatgtggag
caccttaagcaatgcatggcaaaacgttttgatggctctcagcaagcactggacctaaac
aacatccgaacagaccctgacctggtgtcccacaatatagaaattgtcttgaattggaag
acaaacatggaggctgtcataaaaatcattgaagaaaacattccagagctgacctgcttg
aacctgagtaacaatcgtattcacaaactggacgaacttgccgggttggtcaacaaagtg
cccaatctcaagaccctcaacctctctcacaatgagttaaagtcagaccgggagctggac
aaggtgaaaggcctgaagctggttgagctgtggttaaacaggaaccctctgtgtaaccat
ttcaaggatcagccctcatacatcagtgctgtgcgccagaggtttccacgccttctcaaa
ctggatggtcatgaccttccaccacccattggctttgatgtggaaacccccaccacaatc
cccccttgcaagggtagctgttttgggtccgacgaaatcaaggctctcattcttcgcttc
ctgcaacagttctacagcatatacgactctgggaacagacagccactgctggatgcttac
cacgatggagcatcattgtccctcactacaccttactccacccaaaacccctctaggagc
agcctgggagagtatcacaaagacagtcgaaacctaaagagaatcaaagactccacaatg
cgttttcgattgctgaagcacacgcgattgaatgtggtggctttcctcaacgagttgccc
aaaactcagcatgatattgcgtcctttacggtcgatgtaaatacctacacgaacacacta
ctctccttcacagtgagtggagtctttaaggaagttgctgttgatggaaaatctagagac
tccaccatggcattctctcgagttttcatcacagtcccagctgggaattcaggtttgtgt
atagtaaatgaccagcttttcataagaatggctacaacagaggaaattcgtcgagctttt
gtggctcctgccccgactccatcttcgagccctgtccccaccctcacctcacagcagcag
gagatgctcacagccttttcccagaagtcgggcatgaacctggaatggtcccagaagtgt
ctgcaagacaatgagtgggatttcaacagagccgcacaaatctttacacagttaaagagt
gagggccagattcctgatgttgcgttcctaaaatga
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integrated database retrieval system
