KEGG   Betta splendens (Siamese fighting fish): 114865698
Entry
114865698         CDS       T08231                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
bspl  Betta splendens (Siamese fighting fish)
Pathway
bspl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bspl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    114865698 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:bspl03041]
    114865698 (snrnp40)
Spliceosome [BR:bspl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    114865698 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    114865698 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st EIF3I WDR55 Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_EIPR1 Beta-prop_SPT8 WDR90_beta-prop_4th Beta-prop_SCAP ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_DCAF4 Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_WDR75_2nd eIF2A Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Cytochrom_D1 Beta-prop_IFT140_2nd Beta-prop_Nup120_160 Beta-prop_VPS8 WD40_like
Other DBs
NCBI-GeneID: 114865698
NCBI-ProteinID: XP_029022871
UniProt: A0A6P7NSJ8
LinkDB
Position
11:complement(8906227..8910352)
AA seq 347 aa
MIEPKKRAADMAVVPAAVKRPRTELVAAAQSQQLVASGPPRTSSLQAPIMLMSGHEGEVY
CCKFHPNGATLASSGFDRLILLWNVWGDCENYATLKGHSGAVMELHYNTDGSVLFSASTD
KTVGVWDSDTGERIKRLKGHTSFVNTCYPARRGPQLVCTGSDDGTVKLWDIRKKGAIHTF
QNTYQVLAVTFNDTSDQILSGGIDNDIKVWDLRQNKLIYNMHGHGDSVTGLSLSSEGSYL
LSNSMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSTDGSKIAAGSADRFVY
IWDTTSRRILYKLPGHAGSVNEVAFHPEEPVVLSGSSDKRLYMGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgattgaacccaagaagagagccgcggacatggcggtggtcccggcagccgtcaagcga
ccccggacggagctggtggcagcggctcagtctcagcaactcgtggcctcgggtccccca
cggacctccagcctgcaagcccccattatgttaatgtctggccacgagggtgaggtttac
tgctgcaagtttcatccaaatggagccacgctggcctcgtcaggatttgacaggctcata
ttgctgtggaatgtgtggggagactgtgaaaattatgccactctgaaaggacacagtgga
gcagtaatggagctgcactataacacagatggcagtgtactgttttcagcaagcacagac
aagactgtcggtgtgtgggacagtgatacaggagagaggatcaagcgcctgaagggccac
acctcctttgtgaacacctgctaccctgctcgcagaggacctcagcttgtctgtactggc
agcgatgatgggacagtcaaactttgggacatccgtaagaagggagcgatccacactttc
cagaacacttaccaggtgctcgccgtgaccttcaatgacaccagtgaccagattctgtca
ggaggaatcgacaatgacatcaaggtttgggacctgaggcagaataagctgatctacaac
atgcatggccacggtgactcagtaactggactcagcttgagctcagagggttcatacctt
ctttcaaactccatggacaatacagtgcgtatttgggatgttcgaccatttgcgccaaag
gaaagatgtgtgaagattttccagggaaatgttcacaactttgaaaagaatttgctgagg
tgctcctggtccactgatggcagtaagatagctgcaggctcagctgacagatttgtgtat
atttgggacaccacatcacgtaggatcctgtacaagctgccgggccatgctggctcagtc
aatgaagtagccttccacccagaggagcctgtagtgctgtctggctccagtgataaacgg
ctctacatgggagaaatccaatag

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