Betta splendens (Siamese fighting fish): 114866679
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Entry
114866679 CDS
T08231
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114866679 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bspl03019
]
114866679 (mtrex)
03041 Spliceosome [BR:
bspl03041
]
114866679 (mtrex)
03009 Ribosome biogenesis [BR:
bspl03009
]
114866679 (mtrex)
03016 Transfer RNA biogenesis [BR:
bspl03016
]
114866679 (mtrex)
Enzymes [BR:
bspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114866679 (mtrex)
Messenger RNA biogenesis [BR:
bspl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
114866679 (mtrex)
Spliceosome [BR:
bspl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
114866679 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
114866679 (mtrex)
Ribosome biogenesis [BR:
bspl03009
]
Eukaryotic type
Pre-60S particles
Helicases
114866679 (mtrex)
Transfer RNA biogenesis [BR:
bspl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
114866679 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
114866679
NCBI-ProteinID:
XP_029024555
UniProt:
A0A6P7P3B5
LinkDB
All DBs
Position
12:7745753..7759818
Genome browser
AA seq
1036 aa
AA seq
DB search
MADAFGDGLFSVFDDEQQTTTNKKTLPSLAVEPEKAVSKNVSDKDAGPSPRLKREADSDG
GEEVVFGKKARHETVSPNDLNLAEFMPQVKVEQVETVEGCSHEVALPASDEYKPLKPRVG
KAAKEYPFILDPFQREAILCIDNNESVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEDFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVI
FDEIHYMRDLERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGDFREENFNTAMQVLRDAGDSGGSSGGKWDPKGRK
GGTKGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNNDDEKRLVEEVFN
NAVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETF
AMGINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSP
AVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKI
KRLEEQYHAIEIPNEENVVTYYKIRQQLAKLGKEILEFILKPKYCLPFLQPGRLVKVKNE
DIDFGWGVVVNFSKKSNVKATMDSEMLYVVEVLVHCSKDSVKDAATEAAKPAAPGETGEM
QVVPVMLHLLTALSSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPALKKVIQKVEAFEHRMYSHSLHSDPNLESVYSLCEKKALIAADVRIAKRELKKARTVL
QMDKLKCRKRVLRRLGFASPSDVIEMKGRVACEISSGDELLLTEMMFNGLFNDLSAEQAT
ALLSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLSQFKPHL
MDVVYAWANGSTFAQISKMTDVFEGSIIRCMRRLEELLRQMCSAAKAIGNTELENKFAEG
ITKIKRDIIFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgcgtttggagatgggttgttcagcgtgtttgacgatgaacaacaaaccaca
actaataagaagacacttccctccttggctgtagaaccagagaaagctgtcagtaaaaat
gtctctgacaaggatgctggtccatctcctcggcttaagagggaggcagacagtgacggt
ggagaggaggtggtgtttgggaagaaagctcgacatgagacagtctcccctaatgacttg
aatctggcagaatttatgcctcaggttaaggtggagcaagttgagacagtggagggatgc
tcacatgaggtcgctttgcctgccagtgatgaatataaaccactgaaacctcgagtgggc
aaggcagccaaggagtacccatttatacttgacccattccagcgggaggccatcttatgt
attgacaacaatgagtctgtgcttgtgtctgcccacacctctgctggcaagaccgtctgt
gctgaatacgccatcgctctggccctcagagagaagcagagagtgatcttcaccagcccc
atcaaggctctgtctaaccagaaatacagggagatgtatgaagacttccaggacgtgggc
ctgatgactggggatgtcacgattaaccccaccgcctcttgccttgtcatgacaacagag
atcctgaggagcatgttgtaccgaggctctgagatcatgagggaagtggcctgggtcatc
tttgatgagatccattacatgagagatttagaacgaggtgtggtgtgggaggagacgatc
attcttcttccagacaatgtgcattacgtcttcctgtcagccaccatccccaatgccaga
cagtttgctgagtggatttgtcaccttcataagcagccgtgccatgtggtgtacacagat
tatcgccccactccactgcagcactacatatttccagcagggggcgatggactccacctg
gtggttgatgagaacggagattttagggaggaaaacttcaacacagctatgcaggtgctg
agagacgcaggggattctgggggcagcagtggtggcaagtgggatccgaaagggcggaaa
ggaggaaccaaaggtccatccagtgtgttcaagatagtgaagatgatcatggagaggaac
ttccagcctgtcataattttcagcttcagcaagaaagagtgtgaagcctatgctctgcaa
gtggccaaactggactttaacaacgatgatgagaagcgtctggtggaggaagtgtttaac
aacgccgtggactgtctgtcagacgaagacaagaaactcccccaggtggagcatgtgctt
ccactgttgaagaggggcataggaatccaccacggaggactgctgcccatcctgaaggag
accatagagatccttttctccgaaggcctgctcaaggccctttttgccacggaaacattt
gccatgggcatcaacatgcccgctcgcacagtgctcttcaccagcgctcgcaagtttgat
ggcaagaatcaccgctttattacgtcaggtgagtacatccagatgtctggacgtgctggc
aggagaggaatggacgacaggggcatcgttatcttcatggtggacgagaagatgagtcca
gctgtgggcaaacagctactcaagggatcagcagaccccctgaacagtgccttccatctg
acctataacatggtgctcaacctgctgcgtgtggaggaaatcaaccctgagtacatgctg
gagaaatccttttaccagttccagcactacagagctctgcctggtgtggtggagaaaatt
aaacggttagaggagcaataccacgccattgagataccgaatgaagagaacgtagttacg
tactataaaatcagacagcagctggccaaactgggcaaagagatactggagttcatcctt
aaaccaaagtactgcttgcccttcttgcagcctgggcgacttgttaaggtaaaaaatgaa
gacattgactttggctggggagttgttgtgaacttcagcaagaaatcaaacgtgaaggcc
accatggattcagagatgctgtatgtggtggaggtgttggttcactgtagtaaggacagt
gtaaaggatgctgcaactgaagctgctaaacctgcagctccgggagagacgggagagatg
caggtcgtcccggtgatgctgcatctcctgacagccctcagctcagttcgcctttacatc
cccaaagacctgagacctttcgacaacaggcagctcatgctcaagtctatccaggaggtg
cagaaacgtttcccagatggtgttcctcttcttgaccccatagatgacatgggcatcaaa
gacccggctctgaagaaagtcattcagaaggtggaggcctttgagcaccgcatgtactct
cactcccttcacagcgaccccaacctggaatctgtttattctctctgtgagaagaaagct
ctgatcgcagctgatgttcgaatagccaagcgggagctgaagaaagcccggaccgtccta
cagatggacaagctgaagtgcagaaagagagtcctgcgacgcctcggctttgccagcccc
tctgatgtgatcgagatgaaagggcgagttgcctgtgagatcagcagtggtgatgagctc
ctgctgacggagatgatgttcaacggcctcttcaacgacctgtcagccgaacaagccacc
gccctgctgtcctgcttcgtcttccaagagaacgccagcgagatgccgaaactgactgaa
cagctggctgcaccactgagacaaatgcaggagtgtgcaaagcgcatcgctaaagtgtct
gcagatgccaagctggaggtggatgaggagacgtatctgagccagttcaagccccacctt
atggatgtggtctatgcctgggctaatggttccacgttcgctcagatttccaagatgact
gatgtctttgagggaagcatcatccgctgcatgcgtcgcctggaggagctgctgaggcaa
atgtgttcggctgctaaagccataggcaacactgaactggagaacaagtttgcagaaggc
atcacaaagatcaagagagacatcatctttgctgctagtctctacctataa
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integrated database retrieval system
