Betta splendens (Siamese fighting fish): 114867123
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Entry
114867123 CDS
T08231
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114867123 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bspl03041
]
114867123 (prpf4)
Spliceosome [BR:
bspl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
114867123 (prpf4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_EML
PRP4
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_IFT122_1st
Ge1_WD40
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_IFT140_1st
WD_LRWD1
Beta-prop_Vps41
Beta-prop_WDR19_1st
WD40_like
Beta-prop_WDR11_1st
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
114867123
NCBI-ProteinID:
XP_055369622
UniProt:
A0A9W2Y6M6
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Position
12:complement(107517..116205)
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AA seq
510 aa
AA seq
DB search
MSDDEDMTPAVKKSRVFYGSLEEKERERLSCESASGTMAGKNAVKAGIQAGNINISSGET
LEMEERVSERQQEALAEFERRRRARQITVSTDDAEVKAGLRALGEPITLFGEGPADRRER
LRSVLSVVGPDALKKSRKDEERAKRSQDECQQTWYHEGSASLKDARLWLAKYSLPRAMRR
LEAARVQKDVPDSTRVVRQQELHKSLRNLNNFCSQIGDDRPISFCHFSPDSRMLATASWS
GLCKLWSVPDCSLIRTLRGHNTNVGAVVFRPQAGLSLDQSDVSLASCAADGSVKLWNLES
DEPMADIEGHSERVSRVSWHPSGRFLGTTCYDNSWRLWDLDVQEEILHQEGHSKGVHDLS
FHPDGSLAATGGLDAFGRVWDLRTGRCVVFLEGHLKEIYSLHFSPNGYHLATGSGDNTCK
VWELRNRKCLYTIPAHQNLVSAVRFQPTDGHFLLTGAYDNTAKVWSHPGWTPLKTLAGHE
GKVMGIDMSPDGTLIATSSYDRTFKLWLSE
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgacgaggacatgactccagctgtgaagaaaagtcgagttttctatggcagc
ctggaggaaaaagagagagaacgtttgagctgtgagtcggcaagtggcacaatggccgga
aagaatgcagtgaaggcagggatccaggcaggaaacatcaacatctcctcaggtgagact
ctggagatggaggagcgagttagtgagcggcagcaggaggcgcttgctgagtttgagcgg
cggcggcgagcacggcagattaccgtctccactgatgacgccgaggtgaaggctggcctc
cgggcgctcggggagcccatcactctattcggagaggggccagctgaccgtagagagaga
ctgcgaagcgtcctgtctgtggttggacccgatgctctgaagaagtccaggaaggacgag
gagagagcaaagagatcacaggacgagtgccagcagacgtggtaccatgaaggctcagcc
tcgctgaaggacgctcgtctgtggttggctaaatactcactgccacgggccatgaggcgt
ctggaggctgcacgtgttcagaaggatgttcctgattcgacgagggtggtccgacagcaa
gagctgcacaagagcctaaggaacctaaacaacttctgcagccagatcggtgatgatcga
ccgatcagtttctgccacttcagcccagactccaggatgttagccactgcatcctggagc
ggcctctgtaagctgtggtccgtccctgactgtagcctgatccgtacgctcagaggacac
aacaccaatgttggcgctgtcgtcttccgcccacaagccggactctctcttgatcagtct
gacgtcagcttggcgtcatgtgctgctgacggatctgtgaagctttggaacctggaaagc
gatgagcctatggcagacattgagggtcacagtgagcgggtgtcccgggtctcgtggcat
ccttcaggaaggtttttgggaaccacctgttacgataactcgtggcgtctgtgggatttg
gacgttcaggaggaaattcttcaccaggaaggtcacagtaaaggagtccatgacctgagc
ttccaccctgacggctccctggctgctactggaggcttggatgcatttggccgcgtttgg
gaccttcgcacagggcgctgcgttgttttcctggagggacacctaaaggagatctacagc
ctgcacttctcccccaatggatatcacctggcaacaggaagtggtgacaacacctgcaag
gtttgggagctgagaaacagaaagtgcttgtacacaatccctgcccaccagaatttggtg
tctgctgtgcgcttccaacctactgatggtcacttccttttgactggtgcatacgacaac
acggcaaaggtttggagtcatccgggttggactccactgaagacactagctggacacgaa
ggaaaggtgatgggcatcgacatgtcaccggatgggacgctgattgccactagctcctac
gaccgaactttcaagctctggttgtcagagtga
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integrated database retrieval system
