Betta splendens (Siamese fighting fish): 114867234
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Entry
114867234 CDS
T08231
Symbol
ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
bspl
Betta splendens (Siamese fighting fish)
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bspl03041
]
114867234 (ythdc2)
Enzymes [BR:
bspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114867234 (ythdc2)
Spliceosome [BR:
bspl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
114867234 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Helicase_C
HA2_C
OB_NTP_bind
R3H
DEAD
HA2_N
Ank_2
AAA_19
ATPase
nSTAND3
Ank
Ank_5
AAA_22
PhoH
AAA_7
Ank_3
SRP54
Motif
Other DBs
NCBI-GeneID:
114867234
NCBI-ProteinID:
XP_029025571
UniProt:
A0A6P7P011
LinkDB
All DBs
Position
12:complement(11656601..11671170)
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AA seq
1392 aa
AA seq
DB search
MLNTTSQKVARSHKTSRSAQHGPKEIHIDEEVKISVNLSLERFCYSEQKEMQFPSSLSST
ERAFIHRMAQSLGYISKSQGKGSNRFLTIRKKDGSEKPKSTMQLVLSHNSLNSVRSLLQR
FPITSKEHTDMQLNRKSVMSGGGKHAAPFDNSFDSSRASGRLNSGIPMVPERRSASELDS
FWSSLPVRECQGEVLQCIRENRVVLVVGETGCGKTTQIPQFLLDECCRNREPCRIICTQP
RRLAAIAVAERVAAERGETVGQTVGYHIRLESRVSPKTLLTFCTTGVFLRTLMAGDASLT
TVTHVIVDEVHERDGLTDFLLTKMRDVLQTIPSLKLILSSAALDIDLFLQYFGCCPVVHL
RGRQFDVQELFLEDILRLTDFTSKAMRKCQEEITGKEKKKRLTEWCEAVENRYVGKNQSS
PVSVQSHAELSSSSQDRGTSSYDELNENLSEQLEPWLQKEMDSCISNIFLNEDQDAFIQL
FNLILNESVNVDYKHSETGATPLMVAAARGFLTEMEQLLSMGADTNTKASNGWTALTFAK
HFQQMNAVDLLRSSIPLREVGLLDESALLQCESTELTAEDQDMLKLYHQSFDDEWVDLDL
IMHLLQHIFSTTNDGAVLIFLPGYDEIVALRDRILYDNKQFSTCSESYQVFTLHSSMQTK
DQKKAMKTSPPGVRKIILSTNIAETSITINDVVFVIDSGKVKEKSFDTVSHASMLKSVWI
SKASALQRKGRAGRCRPGICFHLFSRLRFTNMLEYQVPQLLRMPLQELCLQTKLLAPSFS
TVAEFLSKAPQPPPVHAVRNAVHMLKTIGAMDQHEALTDLGYHLADLPVEPHLGKMVLCA
VVLKCLDPILTIACTLAYRDPFIIPVNSSQKRAALQCRTRFSSNTFSDHMALLRAFQAWQ
KARTDGWEKPFCEKNFLSQGTMDMILGMRTQLLGQLRAIGFVRARGGSDIRDVNLNSENW
AIVKAALVAGMYPNLVHVNPKTSLLSCKKEKKVNFHPTSALSPSQVKENGPAKGQGLPTD
WLIYDEMSRGHRMASVRCCSLVTAATVAIFGGCVELNGCAVPEPAVPRQADGPLDDVSDD
ETGDLQEVKVDDWLVFKLDSQSAGLLLQLRQKWQNFFIKRIHSPSKPWTQEDEAIIRTLV
SVLTAEEQRAGLQQPPGIGQRPRPMSSEEGYQPSVKGSRSKAQLTSHDKTPVTSRLYQRR
PQDREELSVPRAQLPGDSHFSDCFYSESSSDSPSPCSSGKQVSKPVSPKWSTSSVRYFIM
KSSNVRNIEISQQKGIWSTTPNNETRLAKAFLESDLVILIFSVQGSGHFQGYARMTSGIS
QEGCQDWGFMGLGGVFNVQWIHKESLSFLSSQHIHNSWNDNKKVQISRDGQELDPQAGSR
LLLLWKRDSNTT
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atgctgaatacgacctcacagaaagtagccaggagccacaagacatcacgctctgctcaa
catggccccaaggaaattcatatagatgaagaagtcaagatatcagtaaacctctctctg
gagaggttctgctacagcgagcaaaaagaaatgcagttcccctcctccttatccagcact
gagagggctttcattcaccgaatggcacagtctctgggttacatttctaagagccaaggg
aagggatcaaatcgctttctcaccattaggaagaaagacggctcagagaaacccaagtcc
accatgcagcttgtactctcccacaactccctaaattctgtccgcagcttgcttcagagg
tttcccatcaccagtaaggagcacacagacatgcagctcaacaggaaaagtgtcatgtct
ggaggtggaaaacatgctgcacccttcgataacagctttgacagcagtagggcgagtggg
cgcctaaacagtggcatccccatggtgcccgagaggaggagtgcgtcagaactggacagc
ttctggtcctccctgccagtccgcgagtgccagggggaggtcctccagtgcattcgagaa
aacagagtggtgctggtggtgggagagaccggttgtggaaaaactacacagatcccacag
ttcctacttgatgagtgctgcagaaatagagagccctgcagaatcatctgcactcagcca
agacgcctggcggccatagctgtggctgagagggtggcagcagaaagaggggagactgtg
ggtcagactgtgggctatcacatccgactggagagcagggtctctccaaaaactctgctg
accttctgcaccactggagtcttccttagaaccttgatggctggagatgctagcctgaca
acggtcacacatgtgattgtggatgaggtgcatgagcgtgatggtttgaccgacttcctg
ctcactaagatgagggatgttcttcagacgatcccttcactgaagctgatcctgtccagt
gcagctctagacatcgacctgttccttcagtactttggctgctgccccgttgtgcatctc
agaggaagacagtttgacgtgcaggagctcttcctggaggacattttgaggttaacagac
tttaccagtaaagccatgaggaagtgccaggaagagataacaggaaaggagaagaagaaa
cgtctgactgagtggtgtgaggccgtggagaaccggtatgttgggaagaaccaaagcagc
cccgtgtccgtccaatcccatgctgaactgtccagcagctcccaggacagaggaacgagc
agctacgatgagctgaatgaaaacctctccgaacagctggagccgtggctgcagaaggaa
atggactcatgcatttctaatattttccttaatgaagatcaggatgcgtttattcagctt
ttcaacctgatacttaatgaaagcgttaacgtggactataagcacagtgagaccggggcc
actcctctgatggtggcagcagctcgaggcttccttacagaaatggagcaactgcttagc
atgggagctgacaccaacaccaaggcctccaatggatggacggccttgacatttgccaaa
catttccagcagatgaacgctgtggatcttctccgatcatccattcccctgagagaagtt
ggtctcctggacgagtctgctctgctacagtgtgagagcacagagctgacggctgaagac
caggacatgctcaaactgtatcatcaaagctttgacgatgagtgggtggacctggacctc
atcatgcatctgctgcaacacatcttctccaccaccaacgacggtgctgtcctgattttt
ctccctggatatgatgaaatagtggcacttagagaccgcatcttgtacgataataagcaa
ttctccacctgttctgaaagctaccaggtgttcactctacattcaagcatgcagaccaag
gatcagaagaaagccatgaagacctctccacccggtgtcaggaagataattttatctacc
aacattgctgaaaccagcatcaccatcaatgatgtggtctttgttattgactcagggaag
gttaaggagaaatcctttgatacggtcagtcacgcatctatgttgaagagtgtttggatc
tcaaaagcaagtgccctgcaaaggaagggacgggcgggacgctgcagaccaggtatctgc
ttccacctcttcagtcggctcaggttcaccaacatgctggaataccaggtcccacagctt
ctgcggatgccgctacaggagctctgtctgcagaccaaactgctggctccctccttctct
acagtggcagaatttctgtccaaagcgcctcagcctcctcctgtgcacgccgtcaggaac
gctgtgcacatgctgaagaccataggtgctatggaccagcatgaagccctgaccgatctg
ggctaccacttagcggatctgccagtagagcctcatctaggcaagatggtgctttgtgct
gttgtgctcaagtgtctggaccctattctcactattgcctgtacgctggcctatcgagac
cccttcatcattcctgtcaacagctctcaaaaacgagctgctctgcagtgtcgcacacgc
ttctcgtccaacactttcagtgaccacatggccctgttgagagccttccaggcctggcag
aaggcccgcactgacggctgggagaaacctttctgtgagaagaactttctgtcccaaggc
accatggacatgatacttggcatgaggacacagctgctgggacagctccgtgctatcggt
tttgtgagagctcgtggagggagcgacatccgtgacgtgaacctgaactcggagaactgg
gctatcgttaaggcggccctggtggctggcatgtatcctaatctggtccatgtcaaccca
aagacctccctgttgtcctgtaagaaagaaaagaaggtcaactttcaccccacgtctgcc
ctgagcccgtcccaagttaaagagaacggcccagcgaaggggcagggccttcccacagac
tggctgatctacgatgaaatgagccgcggccacaggatggccagtgtccgctgctgctcc
ttggtgactgccgccaccgtggccatatttggaggatgcgtcgagctaaacggctgtgct
gtgccagagcctgctgttccaagacaagctgacggtccactggatgacgtcagtgacgat
gagactggggacctacaggaggtcaaggtagatgactggcttgtcttcaaactggattca
cagtctgcagggcttctgcttcaactgaggcaaaagtggcaaaactttttcatcaagaga
atccatagtccttcaaagccgtggactcaggaggacgaagccatcatccggacactggtt
tctgtgctcacagccgaggaacagcgagccggcctgcagcagcccccagggatcggccag
cggcctcggcccatgtcatcagaggagggctaccagccgtcagtgaaaggctccaggagt
aaagcccagctgacctcccatgacaagacgccggtgacctcacgtctgtatcagaggaga
ccacaggacagagaagagctgtcagtgcccagagctcagctccctggtgactcacacttc
tctgattgcttctactcagaaagttcctctgacagcccctctccctgctcgtcaggaaag
caggtttcaaagcctgtgtcccctaaatggtccacttcatctgtgcggtactttattatg
aagagcagcaatgtcaggaatatagaaatttcccagcagaaaggcatctggtctactaca
ccaaacaatgagacaagacttgcgaaggccttcctggagagtgatcttgttattctcatc
ttctctgttcaaggctctggacacttccagggctacgcacgcatgacgtcaggcatcagt
caggagggctgccaggactggggcttcatgggactgggaggagtgttcaacgtacagtgg
atccataaggagagtctatctttcctgagcagccaacacatccataattcatggaatgat
aacaagaaggtgcagatcagcagagatggacaggaattggatccccaggcaggcagccgc
ttgctgttactgtggaagagagactccaatacaacttga
DBGET
integrated database retrieval system
