Betta splendens (Siamese fighting fish): 114867993
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Entry
114867993 CDS
T08231
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl04382
Cornified envelope formation
bspl04510
Focal adhesion
bspl04512
ECM-receptor interaction
bspl04518
Integrin signaling
bspl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114867993 (col4a4)
04518 Integrin signaling
114867993 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114867993 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
114867993 (col4a4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
114867993 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bspl04147
]
114867993 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
bspl00536
]
114867993 (col4a4)
Exosome [BR:
bspl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
114867993 (col4a4)
Glycosaminoglycan binding proteins [BR:
bspl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114867993 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
114867993
NCBI-ProteinID:
XP_029027064
UniProt:
A0A6P7PCM0
LinkDB
All DBs
Position
13:20115437..20158939
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AA seq
1659 aa
AA seq
DB search
MLLASCSATWLWCLLIVLRCPPAASGGEQTEPCAGRDCSTCQCFPAKGAMGAPGLLGLLG
RQGPPGFPGSQGPRGDKGHRGDEGPIGAAGMKGDPGAVGVPGFPGSEGIPGHPGPAGGPG
LPGLDGCNGTRGQKGFQGPDGEQGPGGEQGFPGPKGFPGDLSVYYIQYPGVPGDAGPSGL
RGQQGENGLPGQRGLLGPVGPDGTKGLPGLAGPRGPPGEKGRSLIGDKGDEGEQGPQGPP
GPFEVVDPPEELYVKGDQGPLGVKGACGVQGLPGVDASPGIKGKKGVLGFPGPRGFPGIP
GPPGQKGPKGFQGSPGLPGLIGQEGIKGMKGEQGLKGLPQEADVIHTGVAGDPGAPGRRG
PPGELGLMGRPGGQGVPGRGIPGPAGIVGPSGVPGFKGDPGDPGLVYAGELTPGKPGKPG
TPGFRGPKGEPGSPGQYCLSGFPGESGQKGQQGPLGPQGFPGFKGSHGDCSCGPPAILIG
PPGPMGSIGYPGFPGSPGAPGERGDTGLPGEQGGRGQQGQGGFPGHKGLKGQKGDYIVVD
IVGDKGERGQPGYAGRQGFPGRKGLDGLPGPPGDFGSQGQSVPSLLGERGLPGLPGPKGF
LGTGGPPGLGIVGATGERGSPGEAGPPGFPGFLGPKGAKGDTPVANLPCALKNPGLPGEK
GNTGNTGHTGLTGPPGFRGITGRDGAKGEKGYSGIPGPPGRQGPPGFVGDIGEEGPEGLS
YDGDAGLPGKMGIIGLRGPSGDSVVGPPGPIGFPGQPGPQGQKGVPGPPGNIGAPGILGH
AGNPGPKGQSGQDGAPGVPGPPGPSPDLCDAGNPGPRGASGLQGPIGPPGFQGEKGQTRE
AGPPGFGLQGPVGEPGFSGLPGSPGPQGLVGPIGDSGLPGIVGQKGLLGLQGGNGPQGTL
GHKGTSGAPGSKGERGSNGQDGAQGCEGPRGEKGLNGFPGPPGETIVIPIKGLRGNPGPT
GINGFPGPRGSKGAPGPNGEPGYPGTNGPPGVKGQKGPFGSVGKPGDPGPPGHDGPPGVV
GFPGLMGDSGDTGFPGKSGEPGLQGCPGQKGDKGDSIGCPGLPGEKGPPGDSGSPGCPGH
RGDPGKPGFIGAPGQKGCKGDPGDRGDPGEQGVLGLTGPRGFPGHPGLPGRAGSDGPPGP
QGFTGLKGPPGPLGLHGLDGLKGVKGYTGSRGLSTAGPQGSKGLPGNKGPPGHPGPCGPS
QPGPPGLKGPPGLTGPPGDDGLTGKQGLECKGLIPGPPGDPGFAGPDGDVGCPGDVGNPG
PNPPIPGDVGDNGNQGCTGPAGLRGPPGIKGLQGIAGDFGVKGMKGSPGLMGIPGHQGSR
GCPGSSGLPGPKGCDGPVGPKGDRGNVLVPIIPDVPQSPQGLPGPPGPPGATGLVGEIGL
NGLKGAKGDSGVLGLEGPVGPRGPPGDQGKPGCSGERGLDGEKGDPGPRGDPGPPGDARN
VNSGFLLVKHSQSMDVPTCPQRMKELWTGYSLLYLEGQEKAHTQDLGQAGSCMPVFSTMP
FASCNMGACSYASRNDKSYWLSTTAAVPSIPVGGASIREHISRCVVCEAPSSPVALHSQT
SKQPDCPPQWTSLWTGFSFLMHTGAGDEGGGQSLTSSGSCLTDFRAQPFVECQGPRGTCH
YFANIYSFWLTSSNSFSTTLKEEWQQRDNIGRCNVCMRE
NT seq
4980 nt
NT seq
+upstream
nt +downstream
nt
atgctgctggcgtcctgctcagccacctggctctggtgcctcctgattgtcctcagatgt
cctccagcagcgtctgggggcgagcagacggagccgtgcgctggacgggactgctccacc
tgtcagtgtttcccagccaaaggagcgatgggggctccaggtcttttgggcctgctgggc
cgtcagggtcccccaggttttcctggctctcaggggcctcgaggagacaagggccataga
ggagatgagggaccaataggagctgcaggaatgaaaggcgacccaggggctgttggtgtt
cctggttttccaggttcagaaggaatcccaggtcacccgggtcctgctggaggtcctggt
ctcccaggtcttgatggatgtaatggaacaagaggacaaaaaggctttcaaggacctgat
ggagaacaaggacctggtggagaacaggggtttccaggtcccaagggatttccaggagat
ctatcagtgtactacatacagtaccctggggtgccaggagacgctgggcctagtggactt
cgtggacaacagggtgaaaatggtttacctggacaaaggggacttttgggtcctgtagga
ccagatggaaccaagggtctcccaggcctagctggtcccaggggtccacctggagaaaaa
ggccgatctctgattggtgataagggagatgagggggagcagggccctcaggggcctcca
ggtccatttgaggttgttgatcctcctgaagaactgtacgttaaaggagaccagggtcct
ctgggggttaaaggagcctgtggagttcagggactcccgggtgtggacgcttccccaggg
atcaaaggaaagaaaggagttctgggattccctggacccaggggatttcctggtatccct
ggtccacctggacaaaaaggaccaaaggggtttcaaggaagtccaggtcttccaggtctg
attggacaagagggaataaagggcatgaagggagagcaaggtcttaaaggcctccctcag
gaagcagatgttatccacacaggtgtcgctggcgatcctggggcccctggacgccgtggc
ccaccaggagaattgggcctaatgggaagacccggtggtcaaggagtccctggtagaggc
atacctggaccagcaggaattgtgggtccaagtggagttccaggatttaaaggggatcct
ggagatccaggtttggtttatgctggtgaactcacacctggaaaacctggaaaaccagga
accccgggattcagagggcccaaaggagaaccaggaagtccaggtcaatactgtctttct
ggattcccgggagagtctggacagaagggtcaacagggacctttagggcctcagggtttc
cctggatttaaaggtagccatggtgactgttcttgtggacctcctgctatactgattggc
cctcctggccctatgggcagcataggatatccggggtttcctggctccccaggagcccca
ggagagagaggagacacaggtttacctggggagcaaggtggtcgtggtcaacagggtcag
ggtgggtttccaggccacaaagggctgaaaggtcagaagggagattacattgtggtggat
attgtgggcgacaagggagagaggggacaaccgggctatgcaggcagacaaggattccca
ggaagaaaaggactcgatgggctcccggggcctcctggagactttggctcacagggtcaa
agtgttcccagtcttctgggagaaagaggtttaccaggacttccaggaccaaagggattt
ttaggaactggaggcccaccaggactcggtatagttggagcaacaggagaacgtgggtct
cctggagaagcgggacctccaggattccctggctttctagggccaaagggggctaaaggt
gacactccagttgcaaatttgccatgtgctttaaaaaatcctggtctccccggggaaaaa
gggaacactggaaatacaggccacacaggactcacaggtcctccagggtttcgtggcatc
actggacgtgatggcgccaaaggagaaaaggggtattcaggaattcctggaccacctgga
agacaaggaccgccaggttttgttggtgatattggtgaagaaggacctgaaggcttaagt
tacgatggtgatgcaggtttgccagggaagatgggcattattggacttaggggtccttca
ggggactctgttgttgggcctccaggacctattggctttccaggacaaccaggaccccag
ggacaaaaaggagtaccagggccaccaggcaacataggagctccaggcatcttaggtcac
gctgggaatcctggacccaagggtcagagcggccaagatggggctcctggtgtacctggt
cctccaggcccctcacctgacctatgcgatgcaggaaatccaggtcctaggggcgcctct
ggtctacagggccctattggacccccaggttttcaaggggagaaaggtcagaccagagag
gcaggtcctccaggctttggccttcaaggacctgttggtgagccaggtttttcaggtctt
ccagggtccccaggaccccagggccttgttggtcccatcggagactcagggctgccaggg
attgtgggtcagaagggattgttgggacttcaaggaggaaatgggcctcaaggaaccctg
ggacacaaagggacctctggagctccaggatctaaaggagagagagggtcaaatggacaa
gatggtgctcaaggatgtgaagggccacgaggagagaaaggacttaatgggtttcccgga
cctccaggagagaccattgtcatccctattaaggggttgagaggaaacccaggacccaca
ggcatcaacggcttccctggacctcgaggaagtaaaggagcaccaggacctaatggtgag
ccaggatatccaggaaccaatggacctccaggggttaaaggacagaaaggaccatttggg
tctgttggaaaaccaggggatccgggaccacctggtcatgacggacctcctggagtcgtt
ggctttcctggtctgatgggagattcaggtgacacaggctttccaggaaaatctggagaa
cctggtctgcaaggatgtcctgggcagaaaggtgataaaggggactctattgggtgtcct
ggtctacctggagagaaggggcctccaggagactctggatccccaggatgtcctggacat
cgaggagatcccggaaaacccggtttcattggagctccaggtcagaaaggatgcaaagga
gatccaggtgaccgaggagaccctggtgagcaaggagttttgggtctaacaggtcctaga
ggttttccaggtcatccaggtttacctggtagggctggaagcgatggtcctccaggccca
caaggctttacaggactcaaaggtcctccaggaccactgggacttcatggactagatgga
ctaaaaggcgtaaaggggtacactggcagcagaggtctcagtacagcaggacctcaaggt
tccaaaggacttccaggaaacaagggtcctccaggtcacccaggtccctgtggtccatca
caacctggaccacccggactcaaaggtcccccaggacttacaggacctccaggtgatgat
gggcttacaggtaaacaaggactagaatgtaaaggtttaattccaggtccacctggagat
cctggttttgctggaccagatggagacgtaggttgtcctggtgatgtaggtaacccaggt
ccaaacccaccaatacctggggatgttggggacaatgggaaccaggggtgcacagggcca
gcaggcttaagggggccgccagggatcaaaggcctgcaaggcattgctggagattttgga
gtaaaaggtatgaaagggtcaccaggtttgatgggaatacccggtcatcaaggctccaga
ggttgccctggttccagtggacttccaggaccaaagggatgtgatggacccgtgggccca
aagggagacagaggaaatgttctggtacccattatccctgatgtcccacagagcccccaa
ggtctccctggccctcctggtccacctggagcaactggccttgtgggagaaattggccta
aatggattgaaaggtgcaaagggggacagtggcgttttaggcctagaaggtcctgttggg
ccccgaggtccacctggagaccaaggaaagccaggctgttcaggggaaagaggattagac
ggagaaaaaggtgatcctggtccaaggggggacccggggcctcctggagacgccaggaac
gtgaactctggcttcctgttagttaagcatagccagtcaatggatgttcccacttgtcca
caacgcatgaaagagctttggactggatacagtctgctgtacctagagggtcaggagaag
gctcacactcaagacctgggtcaggcggggtcatgtatgcccgttttctccaccatgcca
ttcgcctcatgtaacatgggggcctgctcttacgccagtcggaacgataaatcctattgg
ctgtcgaccacggcggcggttcccagtatacctgtaggtggcgcctccatcagagagcac
atcagccgctgtgtggtgtgtgaggccccatcttcacctgttgcgcttcacagtcagacg
tccaagcagcctgactgccccccccagtggacgagtctatggaccgggttctccttcctc
atgcacacaggtgcaggtgatgagggtggaggccagtcgctgacatcatcagggagctgt
ttgacagacttcagggcccagccctttgtcgagtgtcaggggcccagaggaacctgccac
tacttcgccaacatttacagtttctggctgaccagctccaacagcttctccaccacacta
aaggaggagtggcagcagagggacaacatcgggaggtgtaacgtctgcatgagggagtga
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integrated database retrieval system
