Betta splendens (Siamese fighting fish): 114870477
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Entry
114870477 CDS
T08231
Symbol
col17a1b
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
bspl
Betta splendens (Siamese fighting fish)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
114870477
NCBI-ProteinID:
XP_029030952
EnsemblRapid:
ENSBSLG00000024011
UniProt:
A0A6P7PDP8
LinkDB
All DBs
Position
15:13139087..13156499
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AA seq
1826 aa
AA seq
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MDEITREMDFSGEKVVTETITSTTRLTSLPPKGTSGSNHRNMSSGAGGLGLEKNVLTQST
SGTYFSSSSVGVNTSSYSSSSGVYLGDSSGGGDGGGSYMDGEGYGSGGGSAYLVSSVAKA
RSSSSGGARRAQAAGSAGGLSPGFRERKVTSSRSAGYDGSSSANSSPEFTRKDYGNYCSS
TARGRSENRESEIRARLQSASPTPCRWTELDDVKKLLKGRSSSVSPTRSSTLPVPKKAGV
EAKTVSVATQSVSTSFGSGARSAGFNTIDASGLYDSSLTSGPFDTSVKSGPYDITLISSQ
YDTGVKSAQYDAGLKSGQFDTGAKSGQYDVTLKSGQYDTGVKSSQYDVSLRSGQYDTSVR
SGQYDTGLRLGQYDTGVRSGQYDTSLRSGQYDTGQRSGQYDTLDAILPSFSWSTSTLPST
STTVVTGNASSYSYQVGTNNMAGGSLPVSPASPSSLSVYGFQNNLAPTSGTILTTSGANV
NANVGGYGVQKNVSNGVGVISTGVSTTTRSQSEEAYKRDYKFLMSDKENVQAKKEPEMLI
LAKDSGKQFTTTSSSSVHVGGSGGSLSGDSIKKEKLISSYGEAQLKTETGNSYYGSSGVV
MKDKATYAEIHRDSGIFGGGGFCCCSDSCCSWWKWLLGLLLLSLLLLGLLFGLIALAEDV
RKLKNRVGVLESSANAARTSRLTGDNNHITYVGGGGGGGHTDNTLIIGGGGGSDSRIGIG
VGGGSSSGGNGVDIIGTGGAAGTSGASAGSGATAGSGATAGAGTKAGSGSSAGSGTSAGS
GTSAGSGTSAGSGTSAGSGTGAGSGTGTVSGSGRTSVVSTGSSFGGAVGTGGSTGGGSSF
GGGTGFGTGVSGGYVEVAALQSVIQSMMRSEMQSQTFRNYLVSSVQGERGLPGPKGEPGF
PGISGVPGPEGPKGQKGSQGVQGLEGLPGLRGRDGPAGPRGEPGPPGFGEKGDRGIPGDP
GVAGPMGPKGPPGAPGPAGIPGTAFRGEAGPPGPKGDRGLPGFQGLKGEVGERGVRGLPG
DPGFPGPSGPAGEKGSKGSMGLSGQDGAKGSRGDQGPAGPPGLRGPAGPPGDAGFPGTPG
LQGPPGIPGNPGSPGAKGETGQAGRIINAAGSTSIGIPGPPGPAGPPGPAGPPGLSGPIG
PAGLPGQPGPKGDRGFKGDQGEPGISVRTSETISSTRSEHQFGASSASGSSGLPGPPGPP
GPPGRPGDSRQGPPGPPGPPGPPGYGRPGQKGDKGDSSFSSSSGTFYTGPPGPPGPPGPK
GSTGSQGPRGYQGEPGQPGRPGSSERVTTYAEGHTITGPPGPPGPPGRPGLPGAKGDTGA
PGVPGSSRGSISVTSGPPGPPGPPGPPGQPGSFATSSEMRQHITDYLSRSRQTGTPGPPG
PPGPPGSPGSFSGSMEDISAHVIAYLQRSGYLIGAQGSSGAVSRSLTISELIAMLQREEV
RRYLSGLWVSEGSQGAGAAGGFTSSYTVQEIATYVFNIMNQRGIARGPPGPPGPQGPPGP
SGSGGSGFTTATIDYSALMRNSDFRSWITSAVQQGPPGSPGLPGLPGPPGPQGPPGVSTA
TVFGSGSRGYSLEDIQRYLQGSGFRGLPGPPGPQGPQGPQGPPGSYTGSVTYSGNFPRDS
IRAEVQEYLTSDSVRRFITGPPGPRGQKGERGEPGYIHSNSYSHSDSRRSAVHREDVSRL
SETTDYSNVALKVTDYIKNQGLLQDYLVEGPWRAHVRAIQGPPGPPGPPGPPGYSRVIGS
YGNVTADLMDFFRTHGTIPGPPGSRGPMGERGYPGPKGDKGDPGRPGLPGVPGTYSVQIP
QSVQKRDAGDEAGGRRQRQRRHANSG
NT seq
5481 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaataacgagagagatggacttctcaggagaaaaggttgtgacagaaactata
acgtccacgaccagactgacttctctaccaccgaagggaaccagcggatcaaatcacagg
aatatgtccagcggtgctggagggctgggcttggagaagaatgtcttaacccagagcacc
agtggaacctacttctcttcatcatctgtaggtgtgaacaccagcagctacagctcctcc
tcgggggtctacctcggcgactcctcggggggaggcgacggaggggggagctacatggac
ggggagggctacggaagcggagggggcagcgcttatctggtgagctcggtggcgaaggcc
cggtccagctcgtcgggcggcgccaggcgggcgcaggccgccggctcagcagggggcctg
tcgccaggtttccgggagaggaaggtcacgtccagccgctcggcgggttacgacggaagc
tccagcgccaattcctccccagaattcactcgcaaggattatggaaactattgctcctcc
accgcaagagggaggagcgaaaaccgagagagcgagatcagagccagattacaaagtgcc
tctcccactccctgcagatggacggagctggacgacgtgaagaagctgctgaagggacgc
tccagcagcgtgagccccactcgctcctccaccctccccgtccccaaaaaggccggcgtg
gaggccaagaccgtctccgtggccacgcagtctgtttcaacttcgtttggctcaggcgca
agatcagctggattcaacaccatcgacgcatcgggcctgtacgacagcagcctgacatct
gggccgttcgataccagtgtgaaatcgggcccgtatgatattacgctgatctcaagccag
tatgacacaggtgtgaaatcagcgcagtacgacgccggcctgaaatcagggcagtttgac
accggcgccaaatcaggccagtacgatgtcaccctgaagtctggacagtacgacaccggc
gtcaaatcgagccagtacgatgttagtctgagatcaggccaatacgacaccagcgtgaga
tcgggtcaatacgacaccggtctgagattgggccaatatgacactggcgtgagatcaggc
caatacgacaccagcttgagatcgggccaatacgacacaggtcaaaggtcgggccaatac
gacaccctggatgccatccttccctcgttctcctggtccacctccacgctgccctccacc
tccaccacggtcgtcaccggcaacgccagcagctactcctaccaggtcggcacgaacaac
atggcggggggctccctgccagtcagccccgcctccccctcgtccctgtcagtttatggc
tttcagaataacctggcgcccacctctggcaccattctcaccaccagcggagccaacgtg
aacgctaacgtgggcggttatggggttcagaagaacgtgtctaacggtgttggagtcatc
agcactggagtctctacaaccactagatcccaaagtgaggaagcgtataagagagactat
aagttcttgatgtcggataaggagaacgttcaggccaaaaaggagccagagatgctcatt
ttggctaaagacagcgggaagcagttcaccaccaccagcagcagcagcgtgcatgtagga
ggttcaggagggtcattatcaggggattcaataaagaaagagaagcttatctccagctac
ggcgaggcccaactgaagacagagacaggaaactcctactacggatcatctggagttgtg
atgaaagacaaagccacctacgcagagattcacagagacagcggcatcttcggcggcgga
ggcttctgctgctgctccgactcctgctgctcgtggtggaagtggctgctgggtctgctc
ctcctctccctgctcctgctgggactcctgtttggcctcatagcgctggctgaggacgtg
agaaagctgaagaatcgcgtgggtgtgctggagtccagtgccaacgcggcccgtaccagt
cgtctgaccggtgacaacaaccacatcacctacgtgggcggcggcggcggcggcggccac
acggacaacacgctcatcatcggtggcggcggaggctcagactcacggatcgggatcggc
gtcggtggcggcagctcctccggtggcaacggcgttgacatcatcggtactggtggagct
gctggaactagtggtgccagcgcgggcagtggagccaccgcaggaagtggagccaccgca
ggagctggaaccaaagcaggaagtggatccagtgcaggaagtggaaccagcgcaggaagt
ggaaccagtgcaggaagtggaaccagcgcaggaagtggaaccagcgcaggaagtggaacc
ggcgcaggaagtggaaccggcacagtcagtgggtctggcagaaccagtgttgttagtact
ggctccagcttcggcggggctgttggtactggtggcagcaccggtggtggaagcagcttt
ggtggtggcactgggtttgggaccggcgtgagcggaggatacgtggaggtggccgctctg
cagtcggtcatccagagcatgatgagaagcgaaatgcagtcacagacattcagaaactac
ttagtgtcctctgtgcagggagagagaggactgcctgggcctaaaggagaacctggtttt
cctggaatttcaggtgtgccgggccctgagggtcctaaaggacagaaaggaagccaaggt
gttcagggattggaggggctgccgggtctcaggggccgtgatggtccagctggtcccaga
ggggagccaggacctccaggcttcggagagaagggagacagaggtatccctggagatcct
ggtgttgctggacccatgggaccaaaaggcccacctggagctcctggaccagcaggtata
ccaggtactgctttccgtggagaggccggaccacctgggcctaaaggtgacagaggactt
cctgggttccaaggacttaaaggtgaagttggcgagagaggtgtcagaggtctgcctggg
gatcctggttttccaggtccatctggaccagctggagagaaagggtccaaagggtcaatg
ggcctgtctggacaagatggtgctaaaggctcaaggggtgaccaaggacctgctggaccg
cctggactcagaggtcctgccgggcccccgggagatgctgggtttccaggaactccagga
cttcagggaccgccaggaataccagggaacccaggatcaccaggtgccaaaggtgaaacg
ggtcaagcaggaagaatcatcaatgctgctggctccacttctattggcatccctggacca
cctggacctgctggtccgccagggcctgccggacctccaggactatcaggtcccattggt
cctgctggtctgcctggccaacctggtcctaaaggtgacaggggattcaagggagaccag
ggagaaccaggaatatctgtgagaacctctgaaaccataagctccaccagatctgagcat
cagtttggtgctagtagtgctagtggatcctctggcctacctggcccacctggtccaccc
gggcctcctggacgcccaggagactccagacagggacctccaggaccacctgggcctcca
ggtccaccaggttatggaagaccagggcagaaaggagacaagggagattcaagcttctca
tccagctccggaacattttacactggcccaccaggaccacctgggcctccaggacctaaa
ggatcaacagggtctcagggaccgagaggatatcaaggtgaaccaggacaaccaggaaga
ccaggaagctctgagagagtgacgacatacgctgaaggacacacaatcactgggccacca
ggtccaccagggcctcctggacgtccaggcctaccaggagctaaaggagacactggagct
cctggtgtccctggctcatcccgaggttcaatctccgtcacttcaggccctcctggtccc
cctggtccccctggtcctcctggccagccaggctccttcgctacatctagtgaaatgcgc
cagcacatcactgactatctaagtagaagcagacagactggtacacctggaccaccaggt
ccacctgggcctccaggaagccctggcagcttctctgggtctatggaggatatctctgcc
catgtgattgcatacctgcagcgttcaggttacctcattggtgctcagggctcctccgga
gccgtctctagatctctgaccatcagtgagctcatcgccatgcttcagagagaggaagtg
aggagatatctgtcaggactgtgggtctcagaaggatcacagggagcaggtgcagcggga
ggatttacaagcagttacactgtgcaggagatcgccacatatgtcttcaacatcatgaac
caaagaggcatcgctagaggtccgccaggtccccctggcccacaaggtcctcctgggcct
tctggttcaggaggctctgggttcaccactgctacgattgactattctgccctgatgaga
aactcagacttccgctcatggatcacctccgcggtgcaacagggtccacctggttctcca
ggtttaccaggattgcctggtcctcctggcccccagggcccgccaggagtctccaccgcc
accgtgtttgggtctggaagccgtggctacagcttggaggacattcaacgttacttgcaa
ggttctgggttcagaggacttcctggtcctccaggtccacagggtccacagggtccacag
ggtccaccaggcagttacactggatccgttacctacagtgggaacttccctcgtgacagc
atccgcgctgaagttcaggagtatctgaccagtgacagcgtccgtcgcttcatcaccgga
cctccagggccaaggggtcagaagggagaacgcggagagcccggttatatccacagcaac
agctactctcacagcgactcacggcgcagtgcagtgcacagagaagacgtcagcaggctc
tcggagacaacggactactccaacgtcgctctgaaagttacagactacatcaagaatcaa
ggcctgctccaggattatctggttgagggaccttggagggcacatgtacgagcgatccag
ggaccccccggtccccctggaccccctggaccaccaggctacagccgcgtcattgggtcc
tacggcaacgtcacagccgacctcatggacttctttagaacccatggcaccatccctggc
ccaccaggaagtcgtggaccaatgggggaaagagggtacccgggacccaaaggagacaag
ggtgatcctggacggcccgggttacccggagttcctggaacatacagtgtccaaatccca
caaagtgtgcagaagagagatgcaggcgatgaagcaggtggtcgtcgccagaggcagcgt
cgtcatgccaacagtggctaa
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