Betta splendens (Siamese fighting fish): 114870610
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Entry
114870610 CDS
T08231
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
bspl
Betta splendens (Siamese fighting fish)
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bspl00536
]
114870610 (col13a1)
Glycosaminoglycan binding proteins [BR:
bspl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114870610 (col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
114870610
NCBI-ProteinID:
XP_055358763
UniProt:
A0A9W2XAS8
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Position
15:2522227..2725763
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AA seq
660 aa
AA seq
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MKEGHESRATGKPGEEKRTNCQQQRPFSVRRRCSDSPGVTICILASVLCLGVCTVVFLRT
SELQSRIISLEQQRDARLYAWTLSLEQVEPVILGRLDQILDEKLADRLPKTREVRDAAHG
CLCPPGPPGPPGRAGFLGAPGEPGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGQSGL
KGDMGQRGPTGLTGEPGPKGEKGVCGDYTHRKRRIVQPCVGQLATQLLPITVRNMPSISP
LILKRLKQGEPGMQGPPGQPGPPGPPGAPGLTGASGSPGKPGEPGKPGKDLRLLPGLKGE
PGVPGQKGDKGDQGHKGEAGQTGPRGDPGPSGEPGKAEIHNSENDIHNIPLMGPPGLPGP
PGIPGLQGAKGEVGLPGAPGLDGEKGPRGKPGEPGPKGPVGSEGPRGESGLIGFPGPKGD
KGDIGPSGSPGLDGPTGEKGTTGVPGPIGLPGAMGPKGEAREQRTEFIYGPPGPPGPPGL
VGPAGPQGPSGPKGEPGIGIKGEKGATGQKGDKGDRGHLGLPGAHGLDGRPGPVGLLGPS
GIPGPAGPKGERGEKGDAGLPGSTGAQGIPGLVGPQGLKGNRGERGKKGNRGAKGDKGDQ
GAPGLDAPCPLGFRGFKGEKGEPGLPGLDGLDAPCPVGEDGLPVPGCWNKGQHPFQLAKK
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagggtcatgagtcgagagccactgggaaaccaggtgaggagaagaggactaac
tgtcagcagcagcgaccgttcagtgtgaggagacgttgcagcgattcgccaggcgtaact
atttgcattctagcatctgtgctgtgcctcggagtctgcaccgtggtgtttctacggacc
tcagagctgcagtccagaataattagtttggagcagcagcgggacgcgcgcctctacgcc
tggacactgtctctggagcaggtggagcccgttatcctgggccgtcttgaccagatcctg
gacgagaaacttgcagaccgattgccaaagacaagggaggtgagggacgctgcacatggt
tgtctgtgtcccccaggacccccaggtcctcctggacgagcaggctttctgggagcacca
ggcgagccagggctgtcaatcattggaccaagagggcctcctggacaacctggaacaaga
ggatttccaggatttccaggtccaattgggttggatggcaaacctgggcaaagcggactg
aagggagacatgggccagcgtggtccgacaggattgacaggggaacctggacccaaaggg
gagaagggtgtatgtggtgactacacacatcggaagcgacgtattgtacagccttgtgtt
ggacagttagccacacagttgctgcccatcactgtgcgaaacatgccctcaataagtcct
ctaatattaaaacgcctcaagcagggtgagcctggaatgcaaggaccacctggacagcca
ggaccccctggtcccccaggtgctccaggcctcaccggagccagtggctcaccagggaag
cctggtgaaccagggaaaccaggaaaagatctgaggctactaccaggattgaagggggag
ccaggtgtgccaggacaaaagggagacaaaggtgaccagggacataaaggggaagcaggc
caaactggacctagaggtgatccaggcccaagtggagaaccaggaaaggctgagattcat
aacagtgaaaatgatattcacaacatacctcttatgggtccacctggattgcctggacct
ccagggatccctggactccaaggtgccaagggagaagtgggtctaccaggtgctccagga
ctggatggtgaaaagggccccagaggaaagcctggagagcctggtcccaaaggtcctgtt
ggctcagaaggtccaagaggtgagagtggtttaatcggattcccaggacccaaaggagac
aagggagacattggtccatctggatctcctggtttagacggtcctactggtgaaaagggg
accacgggtgtcccaggccctattggattacctggtgcaatgggtcctaaaggtgaggct
cgagaacaaaggacagaatttatatatggtccaccagggcccccaggacccccaggacta
gttggccctgcaggacctcaaggaccttcagggcctaagggggagccaggcataggcatc
aaaggtgaaaagggagcaacaggtcagaagggtgacaaaggagacagaggccatcttgga
ctacctggggctcatgggttagacggcagaccgggtccagtgggtttattaggaccatcc
gggataccagggccagcaggaccaaaaggagaacggggtgaaaagggagatgcaggatta
cctggatctactggggctcaaggcatccctggtttggtaggaccacaaggactgaaaggg
aaccggggagagaggggcaagaagggcaacaggggggccaaaggggataagggagaccaa
ggagcacctggattagatgccccctgtcctttgggattccgaggctttaaaggggagaaa
ggtgaaccaggcttgccaggcctggatgggctggatgccccttgccctgtgggcgaggat
ggcttacctgtaccaggctgctggaataaaggccagcatcctttccagttggctaagaag
tag
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