Brevibacterium spongiae: L1F31_03935
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Entry
L1F31_03935 CDS
T09030
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
bspo
Brevibacterium spongiae
Pathway
bspo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bspo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
L1F31_03935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bspo03400
]
L1F31_03935
Enzymes [BR:
bspo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
L1F31_03935
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
L1F31_03935
DNA repair and recombination proteins [BR:
bspo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
L1F31_03935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
Prok-RING_1
Zn_ribbon_RRN7
Motif
Other DBs
NCBI-ProteinID:
UVI36819
LinkDB
All DBs
Position
898517..899362
Genome browser
AA seq
281 aa
AA seq
DB search
MPELPEVDALAEFLRRKIVGDFVERIDIAELSLLKTVDPSLDSLAGLEITGTARVGKSLI
IEFAGLDLVCRFARAGWLVWHDRVPTAPLKMGKGPLGMRIRLASGAGIDLTEAGTKKNAS
VALVSDRAEVAALAASGPDALKVDDDQFAVALSTSHGRIKNVLEDQEIIAGIGNAYSDEI
LHTAKISPFAPADSVDAGRLLAAIHTVLGAAREALIGLPPSKVKAAKKRGFSVHGRTGQP
CPVCGSTIAEVSFAEKSLQYCPTCQTGGKKLSDRRMDRLLK
NT seq
846 nt
NT seq
+upstream
nt +downstream
nt
atgccggaactgccagaggtcgacgcgctcgctgagttcctgcgccggaagatcgtcggt
gacttcgtcgaacgcatcgacatcgccgaactcagcctgctcaaaaccgttgacccgagc
ctcgactcactcgccggtctcgagatcaccgggaccgctcgcgtcggcaagtccctcatc
atcgaattcgccggcctcgacctcgtctgccgcttcgcccgagccggctggctggtctgg
cacgacagggttccgaccgccccactgaagatgggcaagggtcctttggggatgcgcatc
cgattggcctcaggggcgggcatcgacctcaccgaggcgggaacgaagaagaacgcctcg
gtggccctcgtttccgatcgcgccgaggtggccgccctcgccgcgtccggacccgacgct
ctgaaggtcgatgacgaccagttcgccgttgcgctgtcgacctcccacgggcggatcaag
aatgtcctcgaggatcaggagatcatcgcgggcatcggcaacgcctactccgatgagatc
ctccataccgcgaagatctccccgttcgctccggccgactccgtcgacgccggtcggctg
ctggcagcgatccacactgtcctcggcgccgcccgtgaggcactcatcggcctgccgcca
agcaaggtcaaagccgcgaagaagcgcggattctccgtccacggccgcaccggtcagcct
tgtccggtctgcgggtcgacgatcgcggaggtgtcgttcgccgagaaatcgctgcagtac
tgtccgacgtgtcagactggcgggaagaagctctcggaccggcgcatggaccggctgctc
aaatag
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