Brevibacterium spongiae: L1F31_05900
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Entry
L1F31_05900 CDS
T09030
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bspo
Brevibacterium spongiae
Pathway
bspo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bspo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L1F31_05900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bspo03021
]
L1F31_05900
03400 DNA repair and recombination proteins [BR:
bspo03400
]
L1F31_05900
Enzymes [BR:
bspo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L1F31_05900
Transcription machinery [BR:
bspo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L1F31_05900
DNA repair and recombination proteins [BR:
bspo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L1F31_05900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF5700
Motif
Other DBs
NCBI-ProteinID:
UVI37873
LinkDB
All DBs
Position
1330562..1334440
Genome browser
AA seq
1292 aa
AA seq
DB search
MYVPDVNFFDELRIGLATAENIRGWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDW
ECACGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLL
DLAPKDLEKVIYFAAYMITSVDEDSRHRDLPSLQNKIDVEKQQIGTRRDADIDRRAKKLE
EDLAALEADGGTAAAKKKLRDTAEKEMDKLRKNADREVDRIEQVWDRFKNLKVNDLEGDE
SLYREMFHRFGLYFSGAMGAEAIQKRLIDFDLDAEAEKLRELIATGKGQRKTRALKRLKV
VNAFLTTDNNPEGMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLL
DLGAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLL
GKRVDYSGRSVIVVGPQLHLHQCGLPKTMALELFKPFVMKRLVDLNHAQNIKSAKRMVER
QHPQVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCSAFNADFDG
DQMAVHLPLSPEAQAEARILMLSANNILKPSDGKPVTMPSQDMIIGLFHLTSERKGLAGE
GRSFSGMGEAIMAFDRGELDLGSPITIRLEDVVPGADIEVPEGWEVGDPLDVQTTLGRAT
FNEYLPADYSFVNSTIDKKALSRIVNHLAEEYPKVEVAHTLDNFKAGGFHWATRSGITIA
MSDVVSPEAKAEILDEAEAIDTKVQQQYELGALTDDERRNELVKLWTETTEKVDQVMRTN
FPEENSVLRLVESGASGNWMQVRQLAGMRGLVTNPKGEIIPRPIVSNYREGLAVLEYFIA
SHGARKGLADTALRTADSGYLTRRLVDVSQDVIIRTAEADSNKGITLPVAERDHEGNLVA
HEYAETSVYGRLTVNDVTDADGNVIVPAKSDVTAATVDTLVAAGIEELKVHSVLTADSDT
QISAEHYGRSMATGKLVDIGEAIGTVAAQSIGEPGTQLTMRTFHTGGAAASTGDITQGLP
RVTELFEARTPKGFAPIAEATGRAKIDDSRKTRFVIITPDDGSEEIEHAVSKRARLLVED
GQHVKAGEQLIVGAVDPKQVLRIRGRREAERFLVEEVQKVYRSQGVGIHDKHIEVIVRQM
LRRVTVIESGDTNLLPGELVDRGRYQAENRRVVAEGGQPASARDELMGITKASLATESWL
SAASFQETTRVLTEAAMEGKSDTLMGLKENVILGKLIPAGTGLQKHRNLVVEPTEEAKAE
MFTNSYGDFYAGIGSDSGSAIPLEDYDYGAFS
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atttacgtgcctgacgtcaatttctttgatgaactgcgcatcggtcttgccaccgcggaa
aacatccgcggctggtcacacggtgaggtgaaaaagcctgagaccatcaactaccgcacc
ctgaagccggagaaggacggactcttctgcgagaagatcttcggacccacccgcgactgg
gagtgcgcctgcggaaagtacaagcgcgtccgcttcaagggcatcatctgcgaacgctgc
ggcgtcgaggtgacccgtgccaaggtgcgccgtgagcgcatgggccacatcgagctcgct
gctcccgtgacccacatctggtacttcaagggtgttccctcccgtctgggatacctgctg
gacctggctccgaaggacctcgagaaggtcatctacttcgctgcctacatgatcacctcc
gtcgacgaggattcccgtcaccgtgatctgcccagcctgcagaacaagatcgacgtcgag
aagcagcagatcggcacccgccgtgacgcggacatcgaccgtcgtgccaagaagctcgaa
gaggatctcgcagcgctcgaggcagacggcggcactgccgcagccaagaagaagctgcgc
gacaccgccgagaaggaaatggacaagctgcgcaagaacgccgaccgtgaggtcgaccgt
atcgagcaggtgtgggaccggttcaagaacctcaaggtcaatgacctcgaaggcgacgag
agcctgtaccgcgagatgttccaccgcttcggcctgtacttctccggtgccatgggcgcc
gaggcgatccagaagcgtctcatcgacttcgacctcgacgccgaagccgagaagctgcgt
gagctcatcgccaccggcaagggacagcgcaagacccgtgcgctcaagcgcctcaaggtc
gtcaacgcgttcctgaccaccgacaacaaccccgagggcatggtcctcgatgtcgtgccg
gtgatcccgccggagctgcgcccgatggtgcagctcgacggcggtcggttcgcgacctcg
gacctcaacgacctctaccgtcgtgtcatcaaccgcaacaaccgcctcaagcgtctgctc
gatctcggtgctcccgagatcatcgtcaacaacgagaagcggatgctgcaggaagccgtg
gactcgctgttcgacaacggtcgtcgcggacgtccggtgaccggaccgggcaaccgtccg
ctgaagtcgctgtcggacatgctcaagggcaagcagggacgtttccgtcagaacctgctc
ggtaagcgtgtggactactcgggccgttcggtcatcgtcgtcggtccgcagctgcacctg
caccagtgcggtctgccgaagaccatggcgctcgaactgttcaagccgttcgtgatgaag
cgcctggtcgacctcaaccacgcacagaacatcaagtcggccaagcgcatggtcgagcgt
cagcacccgcaggtgtgggacgtcctcgaagaggtcatcaccgaacacccggtgctgctc
aaccgcgcaccgaccctgcaccgtctgggcatccaggcgttcgaaccccagctcatcgag
ggtaaggcgatccagctgcacccgctcgtgtgctcggcgttcaacgctgacttcgacggt
gaccagatggctgtgcacctgccgctgagccccgaggcgcaggccgaggcccgcatcctc
atgctctcggccaacaacatcctcaagccttcggacggcaagcccgtgacgatgccttcg
caggatatgatcatcggcctgttccacctcacctcagagcgcaagggactggccggcgag
ggacggtcgttctccggcatgggcgaagcgatcatggccttcgaccgcggagagctcgac
ctcggttcgccgatcaccatccgcctggaggacgtcgttcccggtgcggacatcgaggtg
cccgaaggctgggaggtcggggacccgctggacgtgcagacgaccctgggtcgcgcgacg
ttcaacgagtacctgcctgccgactactccttcgtcaactcgacgatcgacaagaaggca
ctgagccggatcgtcaaccacctggccgaggagtacccgaaggtcgaggttgcccacacg
ctggacaacttcaaggccggcggcttccactgggccacccgttcgggcatcaccatcgcg
atgtcggatgtcgtctcgcccgaggcgaaggccgagatcctcgacgaggccgaggccatc
gacacgaaggtgcagcagcagtacgaactcggtgcactcaccgacgacgagcgtcgcaat
gagctcgtcaagctgtggaccgagacgaccgagaaggtcgaccaggtcatgcgcacgaac
ttccccgaggagaactcggtgctgcgtctggtcgagtccggtgcctccggtaactggatg
caggtgcgtcagctggccggtatgcgcggcctggtgacgaacccgaagggtgagatcatc
ccgcgtccgatcgtgtcgaactaccgtgagggcctggcggtgctcgagtacttcatcgcc
tcgcacggtgctcgtaagggtctggccgataccgctctgcgtaccgctgactccggttac
ctgacccgtcgtctcgtcgacgtgtcgcaggatgtcatcatccgcactgcggaagctgat
tcgaacaagggcatcaccctgccggtggccgaacgcgatcacgaaggcaacctcgttgcc
cacgaatacgccgagaccagtgtctacggccgactcaccgtcaacgacgtcaccgacgcc
gatggcaatgtcatcgtcccggcgaagtccgatgtcaccgcggcaaccgtcgataccctc
gtggctgccggcatcgaggagctcaaggtccactcggtgctcactgcggattccgatacg
cagatctccgccgagcactacggtcgctcgatggcgaccggcaagctcgtcgacatcggc
gaggccatcggcaccgtcgcggctcagtcgatcggtgagcccggcacccagctgacgatg
cgtaccttccacaccggtggtgccgcagcgtcgacgggtgacatcacccagggtctgccg
cgtgtgaccgagctcttcgaagctcgtacgccgaagggcttcgcccccatcgccgaggcg
accggacgggcgaagatcgacgacagccgcaagacccgcttcgtcatcatcacccccgat
gacggcagcgaagagatcgagcatgcagtgtccaagcgtgcccgcctcctcgttgaggac
ggacagcacgtcaaggccggcgagcagctcatcgtcggtgcagtcgatccgaagcaggtg
ctgcgcatccgcggtcgtcgcgaggccgagcgcttcctcgtcgaggaggtccagaaggtc
taccgttcgcagggtgtgggcatccacgacaagcacatcgaggtcatcgtgcggcagatg
ctgcgtcgtgtgaccgtgatcgaatcgggcgacaccaacctgctgcccggcgagctcgtg
gaccgtggacgctaccaggcggagaaccgtcgtgtcgtcgccgaaggcggccagcccgca
tcggctcgtgacgagctgatgggcatcacgaaggcttcgctggccaccgaatcgtggctg
tcggccgcgtccttccaggagaccacccgcgtcctcaccgaggcggccatggaaggcaag
tccgatacgctcatgggtctgaaggagaacgtcatcctcggtaagctcatccctgcaggc
accggcctgcagaagcaccgcaacctcgtggtggagccgaccgaagaggccaaggccgag
atgttcaccaacagctacggagacttctacgcgggcattggatccgactccggatccgcc
attccgctggaggactacgactacggcgcgttcagctga
DBGET
integrated database retrieval system
