Brevibacterium spongiae: L1F31_13040
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Entry
L1F31_13040 CDS
T09030
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bspo
Brevibacterium spongiae
Brite
KEGG Orthology (KO) [BR:
bspo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bspo03016
]
L1F31_13040
Enzymes [BR:
bspo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
L1F31_13040
Transfer RNA biogenesis [BR:
bspo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
L1F31_13040
Prokaryotic type
tRNA splicing ligases
L1F31_13040
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
TarH
Motif
Other DBs
NCBI-ProteinID:
UVI35037
UniProt:
A0ABY5SKI1
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All DBs
Position
2901341..2902510
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AA seq
389 aa
AA seq
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MKKLSTRLISWASLLDEKTLEQAHTTARMPFIYPHLALMPDAHLGKGATVGSVIPTLGAI
IPAAVGVDIGCGMIAVRTQFTRDQLEARDLTGLRKAIERAVPTSAGAYNKKIVKTAAPRI
AELEELAEAAGFDPCDYAGHWRHQLGSLGSGNHFIEVSVDESDRVWMFLHSGSRGIGNKI
AMHHIKVAARLCKQWWIELPDPDLAYLVEGTPEFTAYIRQLKWAQHFALLNREEMMDRVA
RQVSETMGEPVVEEARINCHHNFTQSETHFKKTVWVSRKGAIEADSGRLGLIPGSMGTAS
YVVEGRGNPVSLNSSPHGAGRQYSRTQARKTFTRDQLREAMTGIEYRDTEAFIDEIPQAY
KPIDQVMEDAADLVEIRHTLRQLVNVKGD
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaactcagcacacggctgatctcctgggcgtctctgctcgatgagaagaccctg
gagcaggcgcacacgaccgcgcggatgccgttcatctacccccatctggcgctcatgccc
gatgcgcacctgggcaagggagcgaccgtcggttcggtcatccccaccctcggcgcgatc
attcccgccgccgtcggagtcgacatcggctgcggcatgatcgcggtgcgcacccagttc
acccgcgaccagctcgaagcccgtgacctcaccggtctgcggaaggccatcgagcgagcc
gtgccgacctcggcaggtgcctacaacaagaagatcgtcaagactgctgccccgcgcatc
gccgagctcgaagagctggccgaggcggccggcttcgacccgtgcgactatgccgggcac
tggcggcaccagctcgggtccctgggttccggcaaccacttcatcgaggtctccgtcgac
gagtccgaccgggtgtggatgttcctccactccggatcccggggcatcggcaacaagatc
gccatgcaccacatcaaggtcgcggcccggctgtgcaagcagtggtggatcgagctgccg
gacccggatctggcctacctcgtcgaaggcaccccggagttcaccgcctatatccggcag
ctgaaatgggcgcagcacttcgccctgctcaaccgcgaggagatgatggatcgggtggcc
cggcaggtctccgagaccatgggcgagcccgtggtcgaggaggcgcgcatcaactgccac
cacaacttcacccagtccgagactcacttcaagaagacggtgtgggtctctcggaagggc
gcaatcgaggccgattccggtcgcctcggactcatccccgggtccatgggcaccgcgtcc
tacgtggtcgagggccgtggcaacccggtgtctctgaactcctcaccgcatggtgcgggg
cgtcagtattctcggacgcaggcgcgcaagaccttcacccgcgatcagctgcgtgaggcg
atgaccggcatcgaataccgcgacaccgaggcgttcatcgatgagatcccgcaggcgtac
aagcccatcgaccaggtgatggaggacgcggccgatctcgtcgagatccgccacaccctg
cgtcagctcgtcaacgtcaagggcgactga
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