Bacillus subtilis QB928: B657_11820
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Entry
B657_11820 CDS
T02292
Symbol
yjcD
Name
(GenBank) Putative ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bsq
Bacillus subtilis QB928
Pathway
bsq03420
Nucleotide excision repair
bsq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bsq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B657_11820 (yjcD)
03430 Mismatch repair
B657_11820 (yjcD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsq03400
]
B657_11820 (yjcD)
Enzymes [BR:
bsq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B657_11820 (yjcD)
DNA repair and recombination proteins [BR:
bsq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B657_11820 (yjcD)
MMR (mismatch excision repair)
Other MMR factors
B657_11820 (yjcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_12
AAA_16
Zn_ribbon_NUD
DEAD
Motif
Other DBs
NCBI-ProteinID:
AFQ57099
LinkDB
All DBs
Position
complement(1233209..1235488)
Genome browser
AA seq
759 aa
AA seq
DB search
MKCARLNDRIIHLHTYSREHYQFLFEEGIKGHLFCSHCGKPVLLRLNIADPPEFIHRQPG
DFPACEEACEPKPSKEGKKEDDQESGVIRLPKGKAIAADPSPAVTEWHRPRSIKPGTPFV
PKTIEPDTSLFPSVGLNTDQLKAVTETEGPLLVLAGAGSGKTRVLTARAAHMIEHLGIPP
ENMLLVTFTTKAVAEMKERMANQYGLQPAKVRRIVTGTFHSLFYKILYHSNSAKWNGEHL
LKMEWQREQYIKKALYEEGIDEKESPVDQALQQIGFWKNTYVPNERIPLKDEWEKQVYRL
YEHYERQKKEHSQFDFDDMASACYELFIERPDLLEQYQSRFTYILIDEFQDINPVQYKIM
QMLASPEQNLCCVGDDDQSIYAFRGSNPSFILDFQKDYPGAKTIYLTANYRSTHPIVSSA
DIVVKKNKNRYAKTLEAARDDIQVPVLFYPYDEEEEATMVVSDIKEKIQNGASPEDFAVL
YRTNSGGRAIYERLHQSSIPYTADRGVQSFYSRRIVRQILAYLYASQNEDDTEAIKHLLP
ALFLKQSALNTLKALSITEDCTMIKALAKLPDLKPFQLDKIKKIVPFFASLRTMKPVEAI
TFAEGKMGFSEYLKKRGNEGNKLEKGSDDLRDIKVVAKKFKTIPDFLAHVDHMRAAEKNR
TDEHGVQLMTIHRSKGLEFKTVYVLGTVDGSIPHDFSLETARKGDEAALEEERRLLYVAM
TRAKQHLYLSCPANRRGKTANRSRFLYPLLQKARQPLHH
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatgcgcccgactgaatgatagaatcatacatttacatacatattcgagagaacat
tatcaattcctctttgaagagggaataaaaggacatttattttgttctcattgcggaaag
cccgttttgttacggcttaacatcgccgatccgccagagtttatccatcgccagccaggc
gattttccggcatgtgaggaggcgtgcgaaccgaagccctctaaagaggggaaaaaagaa
gatgatcaggaatctggtgtcattcgtttacccaagggaaaagcgatcgccgctgacccg
tccccagctgttacagaatggcaccgtcctagaagcattaaaccaggaacaccatttgtg
ccaaaaacaatagaacccgatacgagcctttttccgtctgtcggtttaaacacggatcag
ctgaaagctgtcacggaaacagagggcccgctcctcgtgcttgcaggtgcggggagcgga
aaaacacgggtactgacagcccgtgccgcccacatgatcgaacacttaggcataccgcct
gaaaatatgctgcttgtcacctttacaacaaaagctgtcgctgaaatgaaagagcgtatg
gcgaaccagtacggattacagccggcaaaagtcagaagaattgtgacaggaacattccac
agtctgttttataagatcttgtatcactctaattctgctaaatggaacggtgagcatctg
ctgaaaatggagtggcagcgggaacaatatatcaaaaaagcactctatgaagaaggcatc
gatgagaaagaatccccagttgaccaagccctgcagcagatcggtttttggaaaaacact
tatgtcccaaatgaacgcatccctctaaaagatgagtgggaaaaacaagtttatcgttta
tatgaacattatgaacgccagaaaaaagaacacagccaatttgattttgatgacatggct
tcagcctgctatgaattgtttatcgagcggcctgaccttctggaacaatatcaatctcgg
tttacgtatatcttaattgatgagtttcaggacattaatccggttcaatacaaaatcatg
caaatgctcgccagcccggagcaaaacctgtgctgtgtcggagacgatgaccagtccatc
tacgcgtttcgcggaagcaatccgtctttcattcttgattttcaaaaggattatccggga
gcgaagacgatctatttaactgcgaactacaggtctacgcacccgatcgtctctagtgct
gatatcgttgtgaaaaagaacaaaaacagatatgccaaaacgcttgaagcggcccgcgat
gacattcaggtccctgtgctgttttatccttatgatgaagaggaagaagccacaatggtc
gtttccgatatcaaagaaaaaattcaaaatggagccagtccagaagactttgcggttctt
taccgcacaaacagcggaggccgtgctatatatgaaaggcttcatcaatcgtcaattccg
tatacagctgaccgcggcgtccaatcgttttacagcagacggatcgtccgccagattctc
gcctacttgtacgccagccaaaatgaggatgacaccgaggcgattaaacacttgcttccc
gccttgtttttaaaacagtccgctttgaatacgctgaaggcgctctcgattacagaggac
tgtaccatgatcaaagcgctggccaaattgcctgatctgaagccattccagctggacaaa
atcaagaaaatcgtaccgttttttgcaagcctccgcacaatgaaacccgtagaagccatc
acctttgcagaaggaaaaatgggcttctccgagtatttaaaaaagcggggcaatgagggc
aacaagctggaaaaaggctctgatgacctgcgcgacatcaaggttgtcgccaagaagttc
aaaacgattcctgactttcttgcccacgtagaccatatgagggccgctgagaaaaacaga
acggatgaacatggcgttcagctgatgaccattcaccggtcaaaaggccttgaattcaaa
acagtctacgtgttaggcactgtagatggctcgattccgcacgatttctcattagaaacg
gcaagaaaaggagacgaggccgctcttgaggaggaaagacgccttttatatgtagccatg
acccgggcgaaacagcatttatatttgtcttgccctgctaacaggcgcggcaaaacagcc
aaccgctcaagatttttgtatcccctgctacagaaagcaagacagcccttgcatcattaa
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