Bacillus subtilis subsp. subtilis RO-NN-1: I33_2603
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Entry
I33_2603 CDS
T01837
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bsr
Bacillus subtilis subsp. subtilis RO-NN-1
Pathway
bsr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bsr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
I33_2603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bsr03021
]
I33_2603
Transcription machinery [BR:
bsr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
I33_2603
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Exonuc_VII_L
DUF2316
HTH_20
COR
Motif
Other DBs
NCBI-ProteinID:
AEP91554
LinkDB
All DBs
Position
complement(2447842..2448957)
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AA seq
371 aa
AA seq
DB search
MADKQTHETELTFDQVKEQLTESGKKRGVLTYEEIAERMSSFEIESDQMDEYYEFLGEQG
VELISENEETEDPNIQQLAKAEEEFDLNDLSVPPGVKINDPVRMYLKEIGRVNLLSAKEE
IAYAQKIEEGDEESKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDY
RKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPE
EIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLK
EQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHP
SRSKRLKDFLE
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaacaaacccacgagacagaattaacattcgaccaagtaaaagagcaatta
acagagtctggtaaaaaacgtggcgttttgacatatgaagaaattgctgagcgtatgtcc
agctttgaaattgaatcagaccaaatggatgagtattatgaatttttaggtgaacaaggt
gttgaattaattagtgagaatgaagaaacagaagatcctaatattcagcagcttgccaaa
gccgaagaagaatttgaccttaatgacctaagtgtaccgcctggcgttaaaatcaatgac
ccagttcgtatgtatttaaaggaaatcggtcgggttaaccttctttctgcaaaagaagaa
atcgcctacgctcaaaagattgaagaaggtgacgaagaatctaaacgcagattggctgaa
gcgaacctgcggcttgttgtcagtatcgcaaaacgttatgtcggacgcggtatgctgttc
cttgatctgatccaggaaggaaacatgggcctgatgaaagccgttgaaaaatttgattat
cgcaaaggttataaattcagtacgtatgctacgtggtggatcagacaggcgattacacgc
gccattgccgatcaggcgagaacgatccggattcccgttcatatggttgaaaccattaat
aaattaatccgtgtgcagcgtcaattactgcaagacttaggcagagaaccaacacctgaa
gaaattgcggaagatatggatttaacgcctgaaaaagtacgcgaaatcttaaagattgct
caagagccggtatctctggaaacaccgatcggtgaagaggatgactcgcaccttggtgat
ttcattgaagaccaagaagcaacttcaccttctgaccacgccgcatacgagctattgaaa
gagcagctggaagatgtgcttgatacgttaactgatcgtgaagaaaatgtattgcgtctt
cgattcggtcttgatgacgggcgtacaagaacattagaagaggtcggcaaagtatttgga
gtaacgagagagcgtattcgacaaatcgaagccaaagcgttgcggaaactaagacatcct
agcagaagtaaacgtttgaaagatttcctcgaataa
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