Bacillus subtilis subsp. subtilis RO-NN-1: I33_3539
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Entry
I33_3539 CDS
T01837
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
bsr
Bacillus subtilis subsp. subtilis RO-NN-1
Pathway
bsr02020
Two-component system
bsr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bsr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
I33_3539 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
I33_3539 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bsr03021
]
I33_3539 (rpoN)
Transcription machinery [BR:
bsr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
I33_3539 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
MarR_2
HTH_17
Sigma70_r4
HTH_23
HTH_21
HTH_IclR
DUF1425
Motif
Other DBs
NCBI-ProteinID:
AEP92455
LinkDB
All DBs
Position
complement(3309848..3311158)
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AA seq
436 aa
AA seq
DB search
MDMKLQQVQVLKPQLTQELRQAITLLGYHSAELAEYIDELSLENPLIERKETDTPPLSYH
KTNKNRMNAQEAGLQLSNPQKTLQDALKQQSLDMNLTNTEKKIFNYLIHSLDSNGYLEED
IEEAARRLSVSVMEAEAVLAKLQSLEPAGIGARSLQECILLQLQRLPNRNEQAEMLVSAH
FDAFAQKKWKALSEKTGIPLHTIQDISDDIAALHPRPGLLFARPEQEVYIEPDIFITVKN
GHIAAELNTRSFPEIDLHPQYRTLLSSGSCQDTVSYLSAKYQEWRWLSRALRQRKQTITR
IINELTTRQKDFFLKGRSAMKPLTLREVADCLSLHESTVSRAIKGKTIQTPYGLFEMKLF
FSAKAEASGDGDASNYAVKTHLENLINQEDKTKPLSDQKLVDLLNEQHGIQISRRTVAKY
RDQMNIPSSAARKRYK
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggatatgaaacttcagcaagtacaagtattaaagcctcaactgacacaggagctcagg
caggccatcacgctgcttggctatcattcggcagaactcgccgagtacattgatgagctc
tcactggaaaaccctcttattgaacgaaaggaaacagacacaccgccactatcttaccat
aaaacaaacaaaaacaggatgaatgcacaggaagcgggccttcaattaagtaatccgcaa
aaaacattgcaggatgcgttaaaacagcagtcactcgatatgaatctgacaaacactgaa
aaaaagatttttaattatctgattcattcgcttgattcaaacggatacttggaagaagat
atagaggaggcggcacggcgcctatctgtatcggtcatggaagcggaggctgttttggca
aaactccagtcgttagaaccggctggaatcggcgcgagatctttgcaggaatgcatcctt
cttcaattacagcggctgccgaacagaaatgaacaagcggaaatgcttgtttctgctcat
tttgatgcttttgcgcaaaaaaaatggaaagcgctttcagaaaaaactgggattccgctt
cataccattcaagatatctcagatgatatcgcggctcttcatcctagacctggccttctg
tttgctcggccagagcaagaagtgtatattgagcctgacatttttatcactgtaaaaaac
gggcacatcgcagcggaactgaatacccgctcgtttcccgagatcgatctgcatccgcag
tacagaacgcttttatcatccggctcctgtcaggatactgtctcctatttatctgcgaaa
tatcaggagtggcgctggctgagccgcgcgctgcggcagcgaaaacagacaatcacgaga
attatcaatgaactgaccacacgccaaaaggatttctttctgaaagggcgaagcgcaatg
aagccgctgactctcagagaggtagcggactgtctaagccttcatgaatcaactgtgagc
cgggctattaaagggaaaacaatacaaacgccttacgggctgtttgagatgaaactcttt
ttctcagcaaaagccgaggcttcaggtgatggagatgcgtcgaattatgcagtcaaaacg
catctagaaaacctgatcaatcaagaggacaaaacgaaaccgctttctgaccaaaagctt
gtcgatttgctgaatgagcaacacggcatccaaatctcgagacgcaccgtggcaaaatat
cgcgatcaaatgaatattccgtcatcggcagcaagaaagcgatataaataa
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