Bacillus subtilis subsp. spizizenii W23: BSUW23_00285
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Entry
BSUW23_00285 CDS
T01302
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bss
Bacillus subtilis subsp. spizizenii W23
Pathway
bss03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BSUW23_00285 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bss03400
]
BSUW23_00285 (mfd)
Enzymes [BR:
bss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSUW23_00285 (mfd)
DNA repair and recombination proteins [BR:
bss03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BSUW23_00285 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
Zot
AAA_14
Motif
Other DBs
NCBI-ProteinID:
ADM36115
UniProt:
E0TYI4
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All DBs
Position
60530..64063
Genome browser
AA seq
1177 aa
AA seq
DB search
MDNIQTFIKESDDFKSIINGLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNL
YQAQKVTDDLTSLLEDRSVLLYPVNELISSEIAVASPELRAQRLDVINRLTNGEAPIVVA
PVAALRRMLPPVEVWKNSQMLIQVGHDIEPDQLASRLVEVGYERSDMVSAPGEFSIRGGI
VDIYPLTSEHPVRIELFDTEVDSIRSFNSDDQRSIETLTSINIGPAKELIIRPEEKVRAM
EKIDKGLAASLKKLKVDKQKEILHANISYDKERLSEGQTDQELVKYLSYFYEKPASLLDY
TPENTLLILDEVSRIHEMEEQLQKEEAEFITNLLEEGKILHDISLSFSFQKIVAEQKRPL
LYYSLFLRHVHHTSPQNIVNVSSRQMQSFHGQMNVLAGEMERFKKSNFTVVFLGTNKERT
QRLSSVLADYEIEAAMTDSKKALVQGQVYIMEGELQSGFELPLMKLAVITEEELFKNRVK
KKPRKQKLTNAERIKSYSELQIGDYVVHINHGIGKYLGIETLEINGIHKDYLNIHYQGSD
KLYVPVEQIDQVQKYVGSEGKEPKLYKLGGSEWKRVKKKVETSVQDIADDLIKLYAEREA
SKGYAFSPDHEMQREFESAFPYQETEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIGDGKQVALLVPTTILAQQHYETITERFQDYPINIGLLSRFRTRKEANETIK
GLKNGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYN
RVEDIERKADEISMLVPDAKVAYAHGKMTENELETVMLNFLEGESDVLVSTTIIETGVDI
PNVNTLIVFDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTVQFE
TEIDVELDAYIPETYIQDGKQKIDMYKRFRSVATIEEKNELQDEMIDRFGNYPKEVEYLF
TVAEMKVYAKHERVELIKQDKDAVRLTISEEASAEIDGQKLFELGNKYGRQIGLGMEGKK
LKISIQTKGRSANEWLETVLGMLKGLKGVKKQTISST
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggacaacattcaaacctttataaaagaaagcgatgactttaaatccatcatcaacggt
ttacacgaggggctgaaggaacagctgctcgcgggtctgtcgggttccgcgcgttctgtt
tttacttctgccctggctaatgaaacgaataagcctatctttctaatcacccataactta
tatcaagctcagaaagtaacggatgatctgacttcacttctagaggatcggtctgtcctt
ttgtaccccgtcaatgaactcatttcatcagaaatcgcagtcgcaagccctgaattgcgg
gcgcagcgattagatgtcattaatagattaacgaatggagaagcgccaattgtcgttgct
cctgtagctgcactcagaagaatgttgccgcctgtagaggtctggaaaaacagccaaatg
ctcattcaagtgggccatgacatcgaacctgatcagcttgcatcacggctggtagaggta
ggttatgagcgttctgatatggtttcggcacccggagaattcagtattcgtggaggaatc
gttgacatttacccgctgacttcagagcatccggtaagaattgaactttttgacaccgaa
gtggattcaatccgcagctttaactcagatgatcagaggtcaattgagacccttacctcg
atcaatatcggtcctgcaaaggaattgattatcagacctgaagaaaaagtgcgggcgatg
gagaaaatcgataaaggccttgccgcaagcctgaaaaaattaaaggtcgacaagcaaaaa
gaaattcttcatgcgaatatttcttacgataaagaacgcctgtctgaaggccagacagat
caggagctggtgaagtatctctcatatttctatgaaaagcctgctagtttactagattat
acacctgagaacacacttctgattttggatgaagtcagccggattcatgagatggaagag
cagcttcaaaaagaagaagcggagttcataacaaaccttcttgaggaagggaagattttg
catgacatcagtttgtcattcagcttccaaaaaatagtggctgagcaaaaacggcctctg
ctgtactactccttatttttgcggcatgtacaccatacgagtccgcagaatatcgtcaat
gtatcgagtagacaaatgcagagtttccatggccaaatgaacgtactcgcgggtgaaatg
gagcgctttaaaaaatccaacttcaccgttgtattcttaggaactaacaaggaacgtaca
cagagattgtcatctgttctggctgattatgaaatcgaagccgccatgacagacagcaaa
aaagcgcttgttcagggacaggtctatattatggaaggcgagcttcaatcgggatttgag
ctgccgttaatgaagcttgctgttattacggaagaagaactgttcaaaaaccgtgtgaaa
aagaagcctcgaaaacagaaacttaccaatgctgagcgcattaagagctattccgagctt
caaatcggtgattatgtcgttcatattaatcacgggatcggaaagtacttagggattgaa
acccttgaaatcaatggaatccataaagactatttaaatattcattaccagggaagcgac
aagctttacgtccctgtagaacaaattgaccaggtgcaaaaatatgtcggctctgaagga
aaagagccgaaactgtataaattaggcggaagcgaatggaaacgggtcaagaaaaaagta
gaaacatccgttcaggatattgctgatgatttaattaagctgtatgccgaaagggaagcg
agcaagggctatgcgttttctcctgaccatgaaatgcagcgtgaattcgaatcggcgttc
ccttatcaagagactgaggatcagctccgttccattcacgaaatcaaaaaggacatggaa
agagaacgtccgatggaccgcttgctgtgcggagatgtaggttacggaaaaacagaagtt
gccatacgtgctgcgtttaaagcgatcggtgacggaaaacaggtagctctgctcgttcca
acaacgattttggcacagcagcattatgaaaccattactgagcgcttccaggactatccg
attaatattggccttctcagcagattcagaacgagaaaagaagcgaacgaaacgatcaaa
ggattgaaaaatggtactgtagatatcgttatcgggacgcaccggctgctatcaaaagat
gtcgtatacaaagacttagggctcctcatcattgatgaagagcagcgtttcggtgtaacc
cataaagaaaagatcaagcagatcaaagccaatgttgatgtattaacattaacagcaacg
ccgattccgcgtacgctgcatatgtctatgcttggcgtaagggatctttcagtcatcgag
actccgccggaaaaccgcttccctgtacagacatatgttgtggaatacaacggtgccctt
gtcagagaggcgattgaacgtgagcttgcacgcggaggacaggtctatttcttgtacaac
cgggtagaggatattgagcggaaagcggatgagatctcaatgcttgttcctgacgcgaag
gtggcgtatgcgcacgggaaaatgacagaaaacgaactagaaaccgttatgctgaatttc
cttgaaggagaatcagacgttctcgtcagcacaaccattattgaaaccggcgtagacatc
ccgaacgtcaatacgctgatcgtatttgacgcagacaagatgggtctttcccagctttat
cagctgcggggacgcgtcggccgttctaaccgtgtggcgtatgcatacttcacgtaccgc
cgggataaagtgctgacagaagtggctgaaaaaaggctgcaggctattaaagagttcaca
gagcttggttccggttttaaaatcgcaatgcgtgacttaacgattcgcggagccgggaat
cttcttggcgcccagcagcacggcttcatcgattcggtcggatttgacctctattcacaa
atgctgaaggaggccattgaagagcgtaaaggagatacagcgaagacggtgcagtttgaa
acagaaattgatgtcgaacttgatgcgtatattcctgaaacctacattcaagacggcaag
cagaaaattgatatgtataaacgcttcaggtctgtggctacaatcgaagagaagaatgaa
cttcaggacgaaatgattgaccggttcggaaactatccaaaagaggtcgaatacttgttt
actgttgctgaaatgaaggtttatgcgaaacatgaacgtgttgagctgattaagcaggat
aaagatgcggtcagattgacgatttctgaagaagcaagtgcagaaattgacggacagaag
ctgtttgagctcggcaataaatatggcagacaaatcggactgggaatggaaggcaaaaaa
ctcaaaatctccatacagactaaaggccgcagtgccaatgaatggctcgaaaccgtgctg
ggtatgctgaagggcttaaaaggtgtgaaaaagcaaaccatttcatccacgtaa
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integrated database retrieval system
