Bacillus subtilis subsp. spizizenii W23: BSUW23_07470
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Entry
BSUW23_07470 CDS
T01302
Symbol
rnjA
Name
(GenBank) ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bss
Bacillus subtilis subsp. spizizenii W23
Pathway
bss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSUW23_07470 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bss03019
]
BSUW23_07470 (rnjA)
Messenger RNA biogenesis [BR:
bss03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BSUW23_07470 (rnjA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF4453
DUF5548
Motif
Other DBs
NCBI-ProteinID:
ADM37542
UniProt:
E0U3X0
LinkDB
All DBs
Position
complement(1476938..1478605)
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AA seq
555 aa
AA seq
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MKFVKNDQTAVFALGGLGEIGKNTYAVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYL
VKNEDKIKGLFITHGHEDHIGGIPYLLRQVNIPVYGGKLAIGLLRNKLEEHGLLRQTKLN
IIGEDDIVKFRKTAVSFFRTTHSIPDSYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNSENPEFTMSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQ
VIEAAVLNGRKVAVFGRSMESAIEIGQTLGYINCPKNTFIEHNEINRLPANKVTILCTGS
QGEPMAALSRIANGTHRQISINPGDTVVFSSSPIPGNTISVSRTINQLYRAGAEVIHGPL
NDIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKMHVKLATDCGIPEENCFIMDNGE
VLALKGDEASVAGKIPSGSVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSIDMEGFKI
SAGPDLISRGFVYMRESGDLINDAQELISNHLQKVMERKTTQWSEIKNEITDTLAPFLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgtaaaaaatgatcagactgctgttttcgccctcggaggtttgggcgaaatc
ggtaaaaatacgtacgcagttcaatttcaggatgaaattgtgctgattgatgcagggatc
aagtttcccgaggatgaactgctcggcattgactacgttatccctgattacacgtattta
gtcaaaaatgaagataaaattaaagggctttttatcacccacgggcacgaagaccacatc
ggcggtattccgtacctgctcagacaagtgaatattcctgtttacggcggtaaactcgcg
atcggcttacttcggaataaacttgaagagcatggattattaagacagacgaaactgaac
attatcggtgaagatgatatcgtaaagttccgcaaaacggctgtgtcattcttcagaaca
acacatagcattccggattcctacggtatagttgtaaagacgccgccaggaaacatcgta
catactggagatttcaaattcgactttactccagttggcgagccagcaaacttgacgaaa
atggccgaaatcggaaaagaaggcgttctgtgcctcctttcagacagcacaaacagtgag
aacccagagttcactatgtctgaacgccgtgtcggagaaagcattcatgacattttccgc
aaggtagacggccgaattatcttcgctacgtttgcgtcgaatatccaccgcttgcagcag
gtaattgaggctgctgtattaaatggaagaaaagttgccgtatttggacgcagtatggaa
tcggctatcgaaatcggacaaactctcggatatattaactgtcctaaaaatacatttatt
gagcataacgaaatcaatcgtttgcctgccaataaagtaacaattttatgtacaggaagc
caaggggaaccgatggcggcattatcaagaattgcaaacgggacacaccgccagatttca
attaatcctggagatacagttgtattttcttcgtcccctatcccaggcaacacaatcagc
gtgagccggacgatcaaccagctgtatcgcgcgggggccgaggttattcacggacctctt
aatgatatccatacatccggtcacggcggacaggaagaacagaagctgatgcttcgttta
atcaagcctaaattcttcatgccgattcacggtgagtacagaatgcaaaagatgcatgtc
aaacttgcaacagattgtggcatccctgaagaaaactgctttatcatggataatggtgaa
gtattggcgcttaaaggcgatgaagcttcagttgccggtaaaattccgtccggttcagta
tacattgacggaagcggcatcggtgatattggcaatatcgtgcttcgtgaccgcagaatt
ctttctgaagaaggtcttgtcattgtggttgtcagcattgacatggaaggctttaagatt
tcagcgggacctgatttgatttccagaggatttgtgtacatgagagaatctggcgacttg
atcaatgacgctcaagagcttatctcaaaccacctacaaaaagtgatggaacgaaaaacg
actcaatggtctgaaatcaaaaatgagattacagacacgcttgcgccgttcttatatgaa
aaaacgaaacgccgtccgatgatccttccgatcatcatggaagtttaa
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