Bacillus subtilis subsp. spizizenii W23: BSUW23_11235
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Entry
BSUW23_11235 CDS
T01302
Symbol
ypfD
Name
(GenBank) RNA degradation presenting factor
KO
K02945
small subunit ribosomal protein S1
Organism
bss
Bacillus subtilis subsp. spizizenii W23
Pathway
bss03010
Ribosome
Brite
KEGG Orthology (KO) [BR:
bss00001
]
09120 Genetic Information Processing
09122 Translation
03010 Ribosome
BSUW23_11235 (ypfD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03011 Ribosome [BR:
bss03011
]
BSUW23_11235 (ypfD)
Ribosome [BR:
bss03011
]
Ribosomal proteins
Mitochondria/ Chloroplast
Small subunit
BSUW23_11235 (ypfD)
Bacteria
BSUW23_11235 (ypfD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1
S1_RRP5
Spt6_S1
OB_RRP5_4th
S1_2
EXOSC1
S1_RRP4
Xylo_C
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
ADM38287
UniProt:
E0U1C0
LinkDB
All DBs
Position
complement(2246517..2247665)
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AA seq
382 aa
AA seq
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MTEEMNQIDVQVPEVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSSLHVEKASDV
VKVDDELDLKVTKVEDDALILSKRAVDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVD
IGVRGFIPASLVEAHFVEDFTDYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQE
LLQSLEVGSVLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQEVKVK
VLSVDRDNERISLSIKDTLPGPWSQIGEKVKPGDVLEGTVQRLVSFGAFVEILPGVEGLV
HISQISNKHIGTPHEVLEEGQTVKVKVLDVNENEERISLSMRELEEAPKADQEDYRQYQA
KEETSTGFQLGDLIGDKLNKLK
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgacagaggaaatgaatcaaattgatgttcaagtgccagaggttggagatgtagttaaa
gggattgtgacaaaggtagaggacaaacatgtggatgttgaaattatcaatgtcaaacag
tccggcattattccaatcagtgaattatcaagtcttcatgtagagaaagcatcggatgtt
gttaaagtagacgacgagcttgacctgaaagtaacaaaagtggaagacgatgctttgatt
ttatctaaacgtgctgttgatgcagaccgcgcttgggaagaccttgagaaaaaatttgaa
acaaaagaagtgtttgaagctgaagtaaaagatgtcgtgaaaggcggccttgtcgttgat
atcggcgttcgcggttttattccggcatcacttgttgaagcgcatttcgttgaagatttc
actgactataaagggaaaacactgtctctgctcgttgtagagcttgaccgtgacaaaaac
cgcgtcatcctttcacaccgtgctgttgttgaaagtgaacaagcgaataaaaaacaagaa
cttcttcagtcacttgaagttggaagtgtacttgatggcaaagtgcagcgcctgactgat
tttggcgcatttgttgatatcggcggtatcgatggacttgtacacatttcacagctttcc
cactcccatgtagagaagccgtctgatgttgttgaagagggacaagaagtaaaagtgaaa
gtattatccgtagaccgtgataatgaacgtatttctttatccatcaaagatacactgcct
ggaccgtggagccaaatcggcgagaaagtgaagcctggcgatgtgcttgaaggaacggtg
cagcgtcttgtcagcttcggtgcctttgttgaaatccttccaggtgttgaagggcttgtt
catatttctcaaatttccaataaacacatcggcacgccgcatgaagtccttgaagaagga
cagactgtaaaagtgaaggttcttgatgtgaatgaaaatgaggagcgcatttcattaagc
atgcgtgaacttgaagaagcgcctaaagccgatcaagaggattaccgtcaatatcaggcg
aaggaagaaacaagcactggcttccagcttggagacttgatcggagataagctgaataaa
ctaaaataa
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