Bacillus subtilis subsp. spizizenii W23: BSUW23_19420
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Entry
BSUW23_19420 CDS
T01302
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bss
Bacillus subtilis subsp. spizizenii W23
Pathway
bss03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bss00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSUW23_19420 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bss03019
]
BSUW23_19420 (deaD)
03009 Ribosome biogenesis [BR:
bss03009
]
BSUW23_19420 (deaD)
Enzymes [BR:
bss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BSUW23_19420 (deaD)
Messenger RNA biogenesis [BR:
bss03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSUW23_19420 (deaD)
Ribosome biogenesis [BR:
bss03009
]
Prokaryotic type
rRNA helicases
BSUW23_19420 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
ADM39918
UniProt:
E0TXH4
LinkDB
All DBs
Position
complement(3828314..3829753)
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AA seq
479 aa
AA seq
DB search
MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL
CELADWDENKPQALILTPTRELAVQVKEDITNIGRFKRIKATSVFGKSSFDKQKAELKQK
SHMVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTML
FSATLPEDIEKLSRQYMQNPQHIEIKAAGLTTKNIEHAVIQVREENKFSLLKDVLMTENP
DSSIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVA
ARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG
FEIQKIEAPSQEEVARKKPEFLAKMNDRPESKKDKSEELNKDIMKLYFNGGKKKKIRAVD
FVGTIAKIDGVSADDIGIITIMDNASYVEILNGKGPHVLKVMKDTTVKGKKLKVNKANK
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgagtcattttaaaaactatcaaatcagtcatgacattttacgagcattagaaggactg
ggatatacagaaccgaccaaggtgcagcaaagcgtgatccccgctgcccttgaacgaaaa
gatcttgtcgtcaaatcacagactggaagcgggaaaacggcttcgttcgggattcctctc
tgtgagctggcggattgggatgaaaacaagccacaggcgcttattttaacaccgacccgt
gagcttgccgtacaagtaaaagaggatatcacgaacatcggacgatttaaacgaatcaaa
gcgacatccgtgtttggaaaatcatcctttgacaaacaaaaagctgagcttaaacaaaaa
agccacatggttgtcggcacgccgggacgtgtactggatcatatcgaaaagggcacgctg
ccgttagaccgtctctcctatttggtcattgatgaagccgatgagatgctgaatatgggc
ttcatcgagcaagtagaggcgattatcaagcatctgccgacagagcgcacgacgatgttg
ttttcggcaacgctgccggaggatattgagaaattgagccgtcaatatatgcaaaacccg
cagcatattgaaatcaaagcggccggcctaaccacaaagaatattgaacatgcggtgatt
caagtaagagaagagaataagttttctttgctgaaagatgtgctgatgacggagaatccc
gacagctccatcattttctgccggacgaaagagcatgtcaatcagctgaccgatgaattg
gatgacttaggatatccatgcgataaaattcacggcggaatgattcaggaagaccggttc
gacgtcatgaatgaatttaaacggggcgagtatcggtacctagttgcaacagatgtcgcc
gcgcgcgggattgatattgaaaatatctcccttgtcatcaactacgatctgccgcttgaa
aaggaaagctacgtccaccgcacgggccggacggggcgtgcaggaaacaaaggaaaagcc
atttcgtttgtcacggccttcgaaaaacggtttttagccgacattgaagaatatatcgga
tttgaaatccaaaaaatagaagctccttctcaagaggaagtggcaaggaagaaacctgaa
tttctagctaaaatgaatgaccgtccggaaagcaaaaaggacaaaagcgaagaactgaat
aaagacattatgaagctgtattttaacggcggaaagaaaaagaaaatcagagccgttgat
tttgtaggaacgattgccaaaattgacggtgtgtcagctgatgacatcggcattatcacg
atcatggataacgcctcttacgtggagattttaaacggaaaaggccctcatgttctcaaa
gtgatgaaggatacaaccgtcaaagggaaaaagctcaaggtgaataaagcgaataaatga
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