Bacillus spizizenii TU-B-10: GYO_0066
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Entry
GYO_0066 CDS
T01635
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bst
Bacillus spizizenii TU-B-10
Pathway
bst03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GYO_0066 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bst03400
]
GYO_0066 (mfd)
Enzymes [BR:
bst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GYO_0066 (mfd)
DNA repair and recombination proteins [BR:
bst03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GYO_0066 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
Zot
AAA_14
Motif
Other DBs
NCBI-ProteinID:
AEP84830
UniProt:
G4NTC3
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All DBs
Position
60506..64039
Genome browser
AA seq
1177 aa
AA seq
DB search
MDNIQTFIKESDDFKSIINGLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNL
YQAQKVTDDLTSLLEDRSVLLYPVNELISSEIAVASPELRAQRLDVINRLTNGEAPIVVA
PVAAIRRMLPPVEVWKNSQMLIQVGHDIEPDQLASRLVEVGYERSDMVSAPGEFSIRGGI
IDIYPLTSEHPVRIELFDTEVDSIRSFNSDDQRSIETLTSINIGPAKELIIRPEEKARAM
EKIDKGLAASLKKLKVDKQKEILHANISHDKERLSEGQTDQELVKYLSYFYEKPASLLDY
TPENTLLILDEVSRIHEMEEQLQKEEAEFITNLLEEGKILHDISLSFSFQKIVAEQKRPL
LYYSLFLRHVHHTSPQNIVNVSSRQMQSFHGQMNVLAGEMERFKKSNFTVVFLGANKERT
QRLSSVLADYEIEAAMTDSKKALVQGQVYIMEGELQSGFELPLMKLAVITEEELFKNRVK
KKPRKQKLTNAERIKSYSELQIGDYVVHINHGIGKYLGIETLEINGIHKDYLNIHYQGSD
KLYVPVEQIDQVQKYVGSEGKEPKLYKLGGSEWKRVKKKVETSVQDIADDLIKLYAEREA
SKGYAFSPDHEMQREFESAFPYQETEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIGDGKQVALLVPTTILAQQHYETITERFQDYPINIGLLSRFRTRKEANETIK
GLKNGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYN
RVEDIERKADEISMLVPDAKVAYAHGKMTENELETVMLNFLEGESDVLVSTTIIETGVDI
PNVNTLIVFDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKSVQFE
TEIDVELDAYIPETYIQDGKQKIDMYKRFRSVATIEEKNELQDEMIDRFGNYPKEVEYLF
TVAEMKVYAKHERVELIKQDKDAVRLTISEEASAEIDGQKLFELGNKYGRQIGLGMEGKK
LKISIQTKGRSADEWLETVLGMLKGLKDVKKQTISST
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggacaacattcaaacctttataaaagaaagcgatgattttaaatccatcatcaacggt
ttacacgaggggctgaaggaacagctgctcgcgggtctgtcgggttccgcgcgttctgtt
tttacttctgccctggctaatgaaacgaataagcctatctttctaatcacccataactta
tatcaagcccagaaagtaacggatgatctgacttcacttctagaggatcggtctgtcctt
ttgtaccccgtcaatgaactcatttcatctgaaatcgcagtcgcaagccctgaattgcgt
gcgcagcgattagatgtcattaatagattaacgaatggagaagcgccaattgttgttgct
ccggtagctgcaatcagaagaatgctgccacctgtagaggtctggaaaaacagccaaatg
ctcattcaagtgggccatgacatcgaacccgaccagcttgcatcacggctggtagaggta
ggatatgagcgttctgatatggtttcagcacctggggaattcagtattcgcggaggaatc
attgacatttacccgctgacttcagagcatccggtgagaattgaactttttgacaccgaa
gtggattcaatccgcagctttaactcagatgatcagcggtcaattgagacccttacctcg
atcaatatcggtcctgcaaaggaattgattatcagacctgaagaaaaagcgcgggcgatg
gagaaaatcgataaaggtcttgccgcaagcctgaaaaaattaaaggtcgacaagcaaaaa
gaaatccttcatgcgaatatttctcacgataaagaacgcttgtctgaaggccagacagat
caggagctggtgaagtatctctcatatttctatgaaaagcctgctagtttactagattat
acacctgaaaacacacttctgattttggatgaagtcagccggattcatgagatggaagag
cagcttcaaaaagaagaagcggagtttataacaaaccttcttgaagaagggaagattttg
catgacatcagtttgtcatttagcttccaaaaaatagtagctgagcaaaaacggcctctg
ctgtactattctttatttttgcggcatgtacaccatacgagtccgcagaatatcgtcaat
gtatcaagcagacaaatgcagagtttccatggccaaatgaacgtacttgcgggtgaaatg
gagcgctttaaaaaatccaacttcaccgttgtattcttaggagcaaacaaggaacgcaca
cagagattatcatctgttctggctgattatgagatcgaagccgctatgacagacagcaaa
aaagcgcttgttcagggacaggtctatatcatggaaggcgagctccaatcgggatttgag
ctgccgttgatgaagcttgctgttattacggaagaagaactgttcaaaaaccgtgtgaaa
aagaagcctcgaaaacagaagcttaccaatgctgagcgcattaagagctattccgagctt
caaatcggtgattatgtcgttcatattaatcacgggatcggaaagtacttagggattgaa
actcttgaaatcaatggaatccataaagactatttaaatattcattatcagggaagcgac
aagctttacgtccctgtagaacaaattgaccaggtgcaaaaatatgtcggatctgaagga
aaagagccgaagctgtataaattaggcggaagcgaatggaaacgggtcaagaaaaaagta
gagacatccgttcaggatattgctgatgatttaattaagctgtatgccgaaagggaagcg
agcaagggctatgcgttttctcctgaccatgaaatgcagcgtgaattcgaatcagcgttc
ccttatcaagagactgaggatcagctacgttccattcatgaaatcaaaaaggatatggaa
agagaacgtccgatggaccgcttgctgtgcggagacgtaggttacgggaaaacagaggtt
gccatacgtgccgcgtttaaggcgatcggtgacggaaagcaggtagctctgctcgttccg
acaacgattttggcacagcagcactatgaaaccattactgagcgcttccaggactatccg
attaatattggccttctcagcagattcagaacgagaaaagaagcaaacgaaacgatcaaa
ggattgaaaaacggtactgttgatatcgttatcgggacgcaccggctgctatcaaaagat
gtcgtgtataaagacttagggctccttatcattgatgaagagcagcgtttcggtgtaacc
cataaagaaaagatcaagcagatcaaagccaatgttgatgtattaacattaacagcaacg
ccgattccgcgtacgctgcatatgtctatgcttggcgtaagggatctttcagtcatcgag
actccgccggaaaaccgcttccccgtacagacttatgttgtggaatacaacggcgccctt
gtcagagaggcgattgaacgtgagcttgcacgcggaggacaggtctatttcttgtacaac
cgggtagaggatattgagcggaaagcggatgagatctcaatgcttgtccctgacgcgaag
gtggcgtatgcgcacgggaaaatgacagaaaacgaactagaaaccgttatgctgaatttc
cttgaaggagaatcagacgttctcgtcagcacaaccattattgaaacaggcgtagacatc
ccgaacgtcaatacgctgatcgtatttgacgcagataaaatgggtctttctcagctttat
cagctgcggggacgcgtcggccgttctaaccgtgtggcgtatgcgtacttcacgtaccgc
cgggataaagtgctgacagaagtggctgaaaaaaggctacaggctattaaagagttcaca
gagcttggttccggttttaaaattgcaatgcgtgacttaacgattcgcggagccgggaat
cttcttggtgctcagcagcacggctttatcgattcggtcggatttgacctctattcacaa
atgctgaaggaggccattgaagagcgtaaaggagatacagcgaagtcggtgcagtttgaa
acagaaattgatgtcgagcttgatgcgtatattcctgaaacctatattcaagatggcaaa
cagaaaatagatatgtataaacgcttcaggtctgtggctacaatcgaagagaagaatgaa
cttcaagacgaaatgatcgaccggtttggaaactatccaaaagaagtcgaatacttgttt
actgttgcggaaatgaaggtttatgcgaaacatgaacgtgttgagctgattaagcaggat
aaagatgcggtcagattgacgatttctgaagaagcaagtgcggaaattgacggtcagaag
ctgtttgagctcggcaataaatatggcagacaaatcggactgggaatggaaggcaaaaaa
ctcaaaatctccatacagacaaaaggccgcagtgccgatgaatggctcgaaaccgtgctg
ggcatgctgaagggcttaaaagatgtgaaaaagcaaaccatttcatcaacgtaa
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integrated database retrieval system
