Bacillus spizizenii TU-B-10: GYO_0135
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Entry
GYO_0135 CDS
T01635
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bst
Bacillus spizizenii TU-B-10
Pathway
bst03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bst00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GYO_0135 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bst03021
]
GYO_0135 (rpoC)
03400 DNA repair and recombination proteins [BR:
bst03400
]
GYO_0135 (rpoC)
Enzymes [BR:
bst01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GYO_0135 (rpoC)
Transcription machinery [BR:
bst03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GYO_0135 (rpoC)
DNA repair and recombination proteins [BR:
bst03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GYO_0135 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AEP84882
UniProt:
G4NQE3
LinkDB
All DBs
Position
125644..129243
Genome browser
AA seq
1199 aa
AA seq
DB search
MLDVNNFEYMNIGLASPDKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTDPANTPLEKKQLLSEKEYRAYLDKYGNKFQASMGAEAIHKLLQ
DIDLVKEVDMLKEELKTSQGQRRTRAIKRLEVLEAFRNSGNKPSWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPHLKMYQCGLPKE
MALELFKPFVMKELVEKGLAHNIKSAKRKIERVQPEVWDVLESVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERAGAVGEGMVFKNTDEALLAYQNGYVHLHTRVAVA
ANSLKNVTFTEEQRSKLLITTVGKLVFNEILPESFPYMNEPTKSNIEEKTPDRFFLEKGA
DVKAVIEQQPINAPFKKGILGKIIAEIFKRFHITETSKMLDRMKNLGFKYSTKAGITVGV
SDIVVLDDKQEILEEAQSKVDNVMKQFRRGLITEEERYERVISIWSAAKDVIQGKLMKSL
DELNPIYMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIIRETDCGTDRGILAKPLKEGTETIERLE
ERLIGRFARKQVKHPETGEVLVNENELIDEDKALEIVEAGIEEVWIRSAFTCNTPHGVCK
RCYGRNLATGSDVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQATITEIDGTVVEINEVRDKQQEIVVQGAVETRSYTAPYNSRLKVAEGDKITR
GQVLTEGSIDPKELLKVTDLTTVQEYLLHEVQKVYRMQGVEIGDKHVEVMVRQMLRKVRV
IDAGDTDVLPGTLLDIHQFTEANKKVLLEGNRPATGRPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMMQYRKVKPVSNVQPTEDMVPVE
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgtgaacaattttgagtatatgaacatcggtcttgcttcaccggataaaatc
cgttcatggtcttttggtgaagtgaaaaagcctgaaacgataaactatcgtacgttaaaa
cctgaaaaggacggtctattctgcgaacgcattttcggaccgactaaggactgggaatgt
cattgcgggaagtacaagcgagttcgttataaaggcgtagtttgtgaccgctgcggagtc
gaagtaacacgggcaaaagtccgtcgtgagagaatggggcacattgaactggctgcccca
gtttcccacatttggtatttcaaaggtattccaagccgtatgggtcttgtgctggatatg
tcacctcgtgctttagaagaagtcatttactttgcttcttacgttgtaactgatccggca
aacacaccgcttgaaaagaaacagcttctgtctgaaaaagaataccgtgcttatcttgat
aaatacggtaataagttccaagcgtctatgggtgcagaagcgattcataaacttcttcaa
gatatcgatcttgtaaaagaagttgatatgttaaaagaagagctaaaaacttcacaagga
cagcgccgtactcgtgcgatcaaacgtcttgaagttttagaagccttccgtaactcagga
aacaagccttcttggatgatccttgatgtgcttcctgttattcctcctgagcttagaccg
atggttcagctagatggcggacgttttgcgacttctgatttgaatgatctttatcgtcgt
gtcatcaaccgtaacaatcgtttgaaacgccttttggaccttggtgcgcctagcatcatt
gttcaaaacgaaaagcgtatgctccaagaggctgtcgatgctttaattgacaacggccgc
cgcggacgtcctgtaacaggtcctggtaacagaccgttaaaatctctttctcacatgttg
aaagggaagcaaggccgtttccgtcaaaaccttcttggtaaacgtgtcgattactccgga
cgttctgtaatcgttgttggtcctcatttgaaaatgtaccaatgcggattaccgaaggaa
atggcgcttgaacttttcaaacctttcgttatgaaggagcttgttgaaaaaggtcttgct
cacaacattaagagtgcgaaacgtaaaattgagcgcgtacagcctgaagtatgggatgta
ctggaatcagttattaaggagcatccggtacttctgaaccgtgcccctacacttcacaga
ttaggtatccaagcgtttgaaccaacacttgttgaaggacgcgcaatccgtcttcacccg
ctcgtatgtacagcttacaacgctgactttgacggtgaccaaatggcggttcacgtacca
ttatctgctgaagctcaagctgaagcacgcatcttgatgcttgctgctcaaaacatcttg
aaccctaaagatggtaaaccggttgtaacaccgtctcaggatatggtactgggtaactat
tacctgacacttgagcgtgccggtgctgtcggtgaaggtatggtcttcaagaatacagac
gaagcgcttcttgcttatcaaaacggatatgtgcatcttcatacgagagtagctgttgca
gctaactcccttaagaatgtgacatttaccgaagaacagcgctcaaaattgttaattaca
actgttggtaagcttgtcttcaatgaaattcttccggaatcattcccttacatgaatgaa
ccaacgaagagcaacattgaagagaaaacacctgaccgtttcttcttagaaaaaggtgcc
gatgtaaaagctgtcattgaacagcagccaatcaatgcaccgtttaaaaaaggtattctg
ggtaaaatcatcgcggaaatctttaaacgattccatatcacggaaacgtctaaaatgctt
gaccgcatgaaaaacctaggtttcaaatattcaacaaaagctggtattacagttggggtt
tctgacatcgtcgtactcgatgataaacaagaaattcttgaggaagcgcaaagcaaagtt
gataacgtcatgaagcaattccgacgtggtctaatcactgaagaagaacgctatgagaga
gttatctctatctggagtgctgcaaaagacgttatccaaggcaaactgatgaaatcactt
gatgagctcaacccgatctacatgatgagtgactccggtgcccgtggtaacgcgtctaac
tttacgcagcttgccggaatgcgcggcctgatggccaacccggctggacgtatcattgaa
ttaccgatcaaatcaagtttccgtgaaggtctgacagtattggagtactttatctccact
cacggtgcgcgtaaaggtcttgccgataccgcccttaaaactgctgattcaggttacctt
acacgccgtctcgttgacgttgcgcaggatgttatcatccgtgaaactgattgcggaact
gaccgaggcatccttgctaagcctcttaaagaaggaactgaaacaattgagcgcttagaa
gaacgcttaatcggccgttttgcacgaaaacaagtgaagcaccctgaaacaggtgaagtg
cttgtaaatgaaaacgaactgatcgatgaagataaagcactggagattgtagaagccggt
attgaagaagtgtggatccgttctgccttcacatgtaatacgcctcatggtgtatgtaaa
cgatgctatggccgaaatcttgcaactggctccgatgttgaagtcggtgaagcagtcggt
atcattgctgcccaatcaatcggtgagcctggtacacagttaacaatgcgtacattccat
acaggcggggttgccggagacgatatcacacagggtcttccgcgtatccaagagcttttc
gaagcgcgtaatccgaaaggtcaggcaacaattacagaaatcgacggtacagtcgttgag
atcaatgaagttcgtgataagcaacaggaaattgtggttcaaggcgcagtggaaacacgt
tcttatacggcaccttataactcccgcctgaaagtagcggaaggagataaaattactcga
ggccaagtactgacagaaggttcaatcgatccgaaagagcttcttaaagtgactgacctg
actactgttcaagagtatcttctccatgaggttcaaaaggtttaccgtatgcagggtgtt
gaaatcggtgataaacacgtagaagtaatggttcgccagatgcttcgcaaagtccgcgta
attgacgccggtgacactgatgtacttccaggtacattgcttgatattcaccaatttact
gaagcgaacaaaaaggtattgcttgaaggcaatcgtcctgctacaggccgtcctgtcttg
ctcggtattacaaaagcatctcttgaaactgattcattcttatctgctgcttccttccag
gaaacaacacgtgtccttacagacgcagcgatcaaaggtaagcgtgatgagcttcttggc
ttgaaagagaatgttatcatcggtaagcttgttccagctggtacaggtatgatgcaatac
cgtaaagtaaaaccagtttcaaatgttcagccgactgaagacatggttccggttgaataa
DBGET
integrated database retrieval system
