Bacillus spizizenii TU-B-10: GYO_0679
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Entry
GYO_0679 CDS
T01635
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bst
Bacillus spizizenii TU-B-10
Pathway
bst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GYO_0679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bst03019
]
GYO_0679
03009 Ribosome biogenesis [BR:
bst03009
]
GYO_0679
Enzymes [BR:
bst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GYO_0679
Messenger RNA biogenesis [BR:
bst03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GYO_0679
Ribosome biogenesis [BR:
bst03009
]
Prokaryotic type
rRNA helicases
GYO_0679
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
NAT10_TcmA_helicase
CMS1
DD_DDX21-DDX50
Motif
Other DBs
NCBI-ProteinID:
AEP85386
UniProt:
G4NU26
LinkDB
All DBs
Position
628171..629655
Genome browser
AA seq
494 aa
AA seq
DB search
MTITFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIP
LVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKK
NPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTL
LFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQS
PELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDV
AARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTT
KRKMDRMKEPTLDEALEGQQQVTVERLRTAISENNLNFYMTAAAELLEDHDAVTVVAAAI
KMSTKEPDNTPVRLTDEAPMVSKRYKNQRTSKRRDGQGGGYRGGKGKNNNRSSYDKKRSN
DRRSSGDRRQKKSY
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
ttgactataacgtttcaagattttaatttaagttctgatctcatgaaagcaattaatcgt
atgggatttgaagaagcaacaccgattcaggcacaaacgataccgctcggactttcaaat
aaagacgtcattggacaagcgcaaacaggtacaggtaaaacagctgcgtttggtataccc
cttgttgaaaaaattaaccccgagtctcctaatattcaagcaatcgtaatcgcgccaacc
cgtgaattagccattcaagtatctgaagaattatataaaatcggacaagataaacgtgcg
aaggttcttcctatttacggcggacaggatattggacggcaaatccgggcgttaaagaag
aatccgaatattattgtcggaacacctggacgtcttcttgaccacatcaaccgccgcaca
attcgtttaaacaatgtaaacactgttgtaatggatgaagcggatgaaatgctgaacatg
ggattcattgacgacattgaatctattctttcaaacgtgccgagcgagcatcagacactt
ctgttctctgctacaatgccagcgccgatcaaacgcattgcagagcgttttatgactgag
ccggaacacgtaaaagtaaaagcaaaagaaatgacggtttctaacattcagcagttctat
ttggaagtgcaagaacgcaaaaaattcgatacactgactcgccttcttgacattcagtct
cctgagcttgcgatcgtattcggacgtacaaaacgccgtgtcgatgagctggctgaagcc
ctgaaccttcgcggatatgcggctgaaggaattcacggtgacttaacgcaggcaaaacgt
atggttgcgcttcgtaaatttaaagaaggtgcaatcgaagttcttgttgcaactgatgtt
gccgctcgcggacttgatatctcaggcgtcacacacgtgtacaacttcgacgtgcctcaa
gatcctgaaagctatgttcaccgtatcggaagaactggccgtgcaggaaaaacaggtatg
gcgatgacgtttattacaccgcgtgagaaaagcatgcttcgcgcaattgaacaaacaaca
aaacgcaaaatggaccgcatgaaggagcctacacttgatgaagcgttagaaggccagcag
caggttactgttgaacgtcttcgcacggcaatcagtgaaaacaacctaaacttctacatg
acagcggcagctgagctgcttgaagatcatgatgcagtaacagtggttgcggctgctatc
aaaatgtctacaaaagagccggacaacacaccagttcgcttaacagacgaagcgccgatg
gtcagcaaacgctacaagaaccagcgcacttctaaacgcagagacggacaaggcggcggc
taccgcggcggaaaagggaaaaacaacaaccgttcttcctatgacaaaaagcgttcaaac
gatcgccgttcttcaggtgacagacgccagaaaaaatcttactaa
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