Bacillus spizizenii TU-B-10: GYO_3176
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Entry
GYO_3176 CDS
T01635
Name
(GenBank) DNA polymerase III, alpha subunit subfamily, putative
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bst
Bacillus spizizenii TU-B-10
Pathway
bst03030
DNA replication
bst03430
Mismatch repair
bst03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GYO_3176
03430 Mismatch repair
GYO_3176
03440 Homologous recombination
GYO_3176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bst03032
]
GYO_3176
03400 DNA repair and recombination proteins [BR:
bst03400
]
GYO_3176
Enzymes [BR:
bst01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GYO_3176
DNA replication proteins [BR:
bst03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GYO_3176
DNA repair and recombination proteins [BR:
bst03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GYO_3176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
tRNA_anti_2
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
AEP87778
UniProt:
G4NZ81
LinkDB
All DBs
Position
complement(2939404..2942751)
Genome browser
AA seq
1115 aa
AA seq
DB search
MSFVHLQVHSGYSLLNSAAAVEELVSEADRLGYASLALTDDHVMYGAIQFYKACKARGIN
PIIGLTASVFTDDNELEAYPLVLLAKSNTGYQNLLKISSVLQSKSKGGLKPKWLHSYREG
IIAITPGEKGYIEMLLEEGLFEQAAQAALEFQSIFGKGAFYFSYQPFKGHQTLSEQILRL
SEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLTDAPAEDLPDLDLKPLEEMQNIY
RGHPEALQASVEIAEQCRVDVSLGQTRLPSFPTPNGTSADDYLTDICMAGLRSRFGTPDE
RYLRRLQYELGVIKRMKFSDYFLIVWDFMKHAHEKGIVTGPGRGSAAGSLVAYVLYITDV
DPIKHHLLFERFLNPERISMPDIDIDFPDTRRDEVIQYVQQKYGAMHVAQIITFGTLAAK
AALRDVGRVFGVSPKEADQLAKLIPARPGMTLDEARKQSPQLDKRLRESSLLQQVYTIAR
KIEGLPRHTSTHAAGVVLSEEPLTDVVPIQEGHEGIYLTQYAMDHLEDLGLLKMDFLGLR
NLTLIESITSMIEKEENIKIDLSSISYRDDKTFSLLSKGDTTGIFQLESAGMRSVLKRLK
PSGLEDIVAVNALYRPGPMENIPLFIDRKHGRAPVHYPHEDLRSILDDTYGVIVYQEQIM
MIASRMAGFSLGEADMLRRAVSKKKKEILDRERSHFVEGCLKKEYSVDTANEVYDLIVKF
ANYGFNRSHAVAYSMIGCQLAYLKAHYPLYFMCGLLTSVIGNEDKISQYLYEAKGSGIRI
LPPSVNKSSFPFTVEDGSVRYSLRAIKSVGVSAVKDIYKARKEKPFKDLFDFCFRVPSKS
VNRKMLEALIFSGAMDEFGQNRATLLASIDVALEHAELFAADDDQMGLFLDESFSIKPKY
VETEELPLVDLLAFEKETLGIYFSNHPLSAYRKQLAAHGAVSILQAQQAVKRQLSLGVLL
SKLKTIRTKTGQNMAFLTLGDETGEMEAVVFPEQFRQLSPVLREGALLFTAGKCEVRQDK
VQFIMSRAELLENMDAEKAPSVYIKIESSQHSQEILAKIKRILLEHKGETGVYLYYERQK
QTIKLPESFHINADHQVLYRLKELLGQKNVVLKQW
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgttcacctgcaagtgcatagcgggtacagcctgctaaacagcgccgcggct
gtggaagagctcgtcagtgaagctgacaggctcggatatgcgtctttggcgctgacagat
gatcatgtcatgtacggagctattcaattttataaagcatgcaaggcgagaggaatcaac
ccgataatcggtttgacggcttcagtttttacagatgataacgagcttgaagcctacccg
ctcgtcctgctggccaaatcaaatacaggctatcaaaacctgctgaaaatcagcagcgtc
ctgcaatcgaaatcaaaaggcgggctaaagccgaaatggcttcacagttatcgagaaggt
attatcgcaataacgcccggcgaaaaaggatatattgaaatgcttcttgaagaagggctg
tttgaacaggccgctcaagccgcacttgaatttcagtctatattcggtaagggagccttt
tatttctcctatcagccttttaaagggcatcaaaccttgtctgagcagattctgcgtctg
tctgaagaaacgggtatccctgtaacggcgacaggcgatgtgcattacataaggaaagaa
gataaggctgcctaccgctgtctgaaagcgattaaagcaggtgaaaaactgacggatgca
cccgccgaagatcttcctgatctcgatttgaaaccgctcgaagaaatgcaaaatatttat
cgagggcatcctgaagcactgcaagcttctgttgagatcgcggaacaatgccgggttgat
gtcagcctcgggcagacccgtctcccgtctttcccgactccaaacggaacgtccgctgat
gattatttaacggacatctgtatggcaggactccgcagccgttttggcacgcctgatgaa
cgatatcttcgccgccttcaatatgagcttggtgtcatcaagcggatgaaattcagcgat
tactttctgatcgtatgggattttatgaagcatgcccatgaaaaagggatcgtcacggga
ccgggaaggggttctgcggcaggctctctagtggcttatgtgctgtatatcacagatgtt
gacccgattaaacatcacctgctgtttgaacgatttttaaatcccgaacgtatcagtatg
ccggatatagatattgacttcccggatacaagaagagatgaagtcattcaatacgttcag
cagaaatacggtgcgatgcatgttgcgcagattataacctttggaacacttgcggcaaaa
gcggcgcttcgggacgtcggcagagtattcggcgtaagcccgaaggaagcagatcagctt
gcaaaactcattccagcaaggccgggcatgacgctggatgaggcgagaaagcagtcgccg
cagctggataagcggcttcgggagtcaagcctgcttcagcaagtctatacgattgcccga
aaaatagaagggctgccaaggcatacatcaacacacgcagcaggcgttgtcctgagtgaa
gagccattaaccgatgttgttccgattcaggaagggcatgaagggatatatttgacgcaa
tacgcgatggatcatcttgaagacttgggccttttaaaaatggatttcttaggtttgcgc
aacctgactctgatcgagtccatcacttcaatgatcgaaaaagaagaaaacatcaaaata
gatctttcaagtatttcctaccgtgatgacaaaacgttctccttgctgtcaaaaggggat
acgacagggattttccagcttgaatctgcagggatgagaagcgtcttgaagaggcttaaa
ccttcaggcctggaggatattgtggcggtcaatgcgctgtaccggcctggtccgatggaa
aatattccgctatttattgaccgtaaacacggtcgggcgcctgttcactatcctcatgaa
gatttaaggagcatcttggacgatacatatggcgtcattgtgtatcaggaacaaattatg
atgattgcttcccgcatggcagggttttctttaggcgaagctgacatgctgagacgggcg
gtcagcaaaaagaaaaaagaaatcctggacagagagcgaagccattttgttgaagggtgc
ttaaaaaaggagtattctgtagacactgcaaatgaagtctacgatttaatcgtcaaattc
gcaaactatggctttaaccgaagccatgcggtggcatacagcatgattggctgccagctt
gcgtatttgaaagctcattatccgttatattttatgtgcggattgctgacaagcgtcatt
ggcaatgaggataaaatatctcaatatctttacgaagcaaaggggagcgggattcgtatc
cttcctccgtcagtgaacaaaagcagttttccgtttacagttgaagacggatctgtcaga
tacagcctccgcgcgataaaaagtgtaggcgtctcagcagtaaaagatatatataaagca
agaaaagagaaaccatttaaagatcttttcgatttctgctttcgcgtgccgtcaaaaagc
gtaaatcgcaaaatgcttgaagcacttatcttttctggtgcgatggacgaattcggccaa
aaccgggccacgctgctcgcatccattgatgttgctttggaacatgctgagctattcgcc
gcggacgatgaccaaatgggattgtttttagatgaatcgttttcaattaagccgaagtat
gtggagacggaggagcttccgcttgtggatttacttgcgtttgaaaaagagacgctcggc
atttatttttcaaatcatccgctctctgcctaccgaaaacagctggctgcgcacggagca
gtgtccattctgcaggcccagcaggctgtcaaaaggcagctttctctcggagttctgctg
tcaaagctcaagacgattcggacgaaaacaggtcaaaatatggcgtttttaacgctcggt
gacgaaaccggcgaaatggaagccgtagtcttccctgaacaattcagacagctttctccc
gttttaagagaaggcgctcttttgttcacagcggggaaatgtgaagtaaggcaggataag
gtccagtttatcatgtcccgggcagaattattagaaaatatggatgcagaaaaagcgcca
tcggtttatataaaaatagaaagcagtcagcacagtcaggagatcctggcaaagattaag
cgcattttgctggagcataaaggggaaacaggcgtttatctctattatgaaaggcagaaa
cagacgattaagcttcctgagtcgtttcatatcaatgcggatcaccaggtattatatcgc
ttaaaagagctgttgggtcaaaaaaacgtcgttttaaaacagtggtaa
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