Bacteroides stercoris: K6V31_04950
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Entry
K6V31_04950 CDS
T07883
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bste
Bacteroides stercoris
Pathway
bste03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bste00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K6V31_04950 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bste03021
]
K6V31_04950 (rho)
03019 Messenger RNA biogenesis [BR:
bste03019
]
K6V31_04950 (rho)
Transcription machinery [BR:
bste03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
K6V31_04950 (rho)
Messenger RNA biogenesis [BR:
bste03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
K6V31_04950 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA
AAA_25
NACHT
OB_RNB
Mor
Motif
Other DBs
NCBI-ProteinID:
UBE42192
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All DBs
Position
1154082..1156061
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AA seq
659 aa
AA seq
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MYNIIQLNDKNLSELQAIAQELGIKKTDSLKKEELVYKILDEQAIAGATKKVAADKLKEE
RKGDKQKRSRVTVKKEAADKVFTANKNGELTKGKTEEAPAVQASVQAAEAAKEPAVAATP
AAETEVPKRKPGRPRKVKQEAAPVAETPKTVPAETKVETTEPKKAEPKKVVAASQPTPDE
SPVLPEAEDDFIPIEDLPTEKIELPSELIGKFEATKAETPVPATEQPQQRSRLRLRDNNT
PYNNNRNNNNQRPAQQQQRPAQQQNNNENYVAPERKPAIEREKAYEFDDILTGTGVLEIM
QDGYGFLRSSDYNYLSSPDDIYVSQSQIKLFGLKTGDVVEGVIRPPKEGEKYFPLVKVSK
INGRDPAFVRDRVPFEHLTPLFPDEKFKLCKGGYSDSLSARVVDLFAPIGKGQRALIVAQ
PKTGKTILMKDIANAIAANHPEVYMIMLLIDERPEEVTDMARTVNAEVIASTFDEPAERH
VKIAGIVLEKAKRMVECGHDVVIFLDSITRLARAYNTVSPASGKVLSGGVDANALHKPKR
FFGAARNIEGGGSLTILATALIDTGSKMDEVIFEEFKGTGNMELQLDRNLSNKRIFPAVN
IVASSTRRDDLLQDKQTLDRMWILRKYLADMNPIEAMDFVKDRLEKTKDNDEFLMSMNG
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgtataatatcattcaattaaacgacaaaaatttgtcggaactgcaagctattgcccaa
gaattgggtatcaaaaaaacagactctctcaaaaaagaagaactcgtttacaagatactt
gacgaacaagccattgctggagcaaccaagaaagtagcagccgacaaattaaaagaagaa
cgtaaaggggacaagcaaaaacgttctcgcgtaacggtcaagaaagaagcagcggacaag
gtattcacagccaataagaacggtgaactcacaaaagggaaaaccgaagaagcacctgcc
gtacaagcttccgtacaagcagcagaggcggctaaagaaccggccgtagccgcaactccc
gcagcagagactgaagttcccaaacgcaaaccgggacgtcctcgcaaagtaaaacaagaa
gcggctcccgtagcggaaacacctaaaaccgttccggcagaaactaaagtagaaactaca
gagccgaaaaaagcagaacccaagaaagttgttgcagcctcccagcctacaccggatgaa
agtcctgtcttgccggaagcagaggatgactttatccccatcgaggatttgccaaccgaa
aaaatagaactgccgtcagagctcatcggcaaattcgaagccaccaaagcagaaactccc
gttcctgcaacagagcaaccgcaacaacgctcccgtcttcgcctccgcgataacaatacg
ccatacaacaacaatcgtaacaataacaaccagcgtcctgcacaacagcagcaacgtcct
gcacaacaacagaacaacaacgagaattatgttgctcccgaacgcaagccggcaatagaa
cgtgaaaaggcgtacgaattcgacgatatactcacaggaaccggcgtattggaaatcatg
caggacggttatggattcctgcgctcatccgattataactacctttcttctcccgatgat
atttacgtttcacaatcacaaatcaagctgttcggcctgaagaccggtgatgtagtggaa
ggtgttatccgtccacccaaggaaggagagaaatatttcccgctggtaaaagtatccaag
attaacggacgtgacccggcttttgtacgcgaccgtgtaccgttcgaacatctcaccccg
ctcttcccggacgagaaattcaaactttgcaaaggcggatattccgactccctgtctgcc
cgcgtagtagacctctttgcgcccattggtaaaggccagcgcgcactaatcgtagcacag
cccaaaacgggtaagactattctgatgaaggacattgccaacgccattgcagccaaccac
ccggaagtgtacatgattatgctattgattgatgaacgtccggaagaagttaccgacatg
gcccgtaccgtaaatgcagaggttattgcctctactttcgacgaaccggcagaacgtcac
gtgaaaatagcaggcattgttttggagaaggccaaaagaatggtagaatgcggacatgac
gttgttatcttccttgactccataacacgtttggcacgtgcctacaatactgtttccccg
gcttcgggtaaagtattgtccggaggtgtggacgccaacgcactgcacaagccgaaacgc
ttcttcggtgctgcccgcaacattgaaggcggtggttcgctgaccatccttgctacggcg
cttatagataccggttccaaaatggacgaagtgatctttgaagagttcaaaggtactggt
aatatggaactgcaactcgaccgcaacctgtccaacaagcgcatcttcccggctgtcaat
atcgttgcttccagcactcgtcgcgatgacttgctgcaagacaagcaaacgctggatcgc
atgtggattctccgcaagtatcttgccgatatgaacccgatagaagcaatggacttcgta
aaagaccgtttggaaaaaaccaaagacaacgatgaattcctgatgagcatgaacggttaa
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