Bacteroides stercoris: K6V31_12600
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Entry
K6V31_12600 CDS
T07883
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bste
Bacteroides stercoris
Pathway
bste03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bste00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K6V31_12600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bste03019
]
K6V31_12600
Enzymes [BR:
bste01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K6V31_12600
Messenger RNA biogenesis [BR:
bste03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K6V31_12600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_19
ERCC3_RAD25_C
CMS1
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UBE40646
LinkDB
All DBs
Position
3026635..3027753
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AA seq
372 aa
AA seq
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MTFKDLNITEPILKAIEEKGYANPTPIQVKAIPAALTGKDILGCAQTGTGKTAAFAIPII
QHLQALKNRDKSIKALILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRAQVNMLH
KGVDILVATPGRLLDLMNQGYIHLDNVRHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQT
LFFSATMPDTIIALTNSLLKQPVKITITPKSSTVDTIEQAIYFVEKKEKSKLLISILHKT
EGQSVLVFSRTKHNADRIVRVLSKAGIGSQAIHGNKSQNARQSALENFKTGKIRVMIATD
IAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNLGTALTFCSQEERKLVNDIQKL
TGKKLSKVEFAI
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaagatttaaatataaccgaacctattttaaaagcaattgaagaaaaaggg
tatgccaatcctacccctatacaagtaaaagcaatccctgccgccttaacaggaaaagac
atattaggctgtgcgcagaccggaactggaaagaccgctgcatttgccattcccattatt
cagcatttgcaagcccttaaaaaccgggataagagtatcaaagccttgatactgacacct
acccgtgaattggcattgcagattagcgaatgcatagacgactatgccaaatatacgcaa
gtccgtcatggggttatcttcggaggagtaaaccagcgtgcacaggtaaatatgctccat
aaaggagtcgacatattggtcgccactccaggacgtctgttggatttgatgaatcaggga
tatatccatttggataatgtgcgacacttcgtactggatgaggccgaccgtatgcttgat
atgggatttatccatgacatcaaacgtttgttgccgaaacttcctaaagaaaagcagacc
ttgttcttctcggctaccatgcccgatacgataatcgctttgacgaactcactgctgaaa
caaccggtgaagattactataaccccaaaatcatctacggtagatactatcgaacaggct
atttattttgtggagaagaaagagaaaagtaaattgttgatttctattttgcataaaacg
gagggacaatcggtgcttgttttctcacgtaccaagcataatgcggacagaattgtccgc
gtattaagcaaagcaggtatcggtagtcaggctattcatggaaataaaagtcagaatgca
aggcaatctgcattggaaaacttcaaaacgggtaagatacgcgtaatgatagctaccgat
attgcagccagaggcattgatatcaatgagttgccgttggttataaactatgaccttccc
gatgtgcccgagacgtatgtgcatcgtatcggacgtaccggtagagctggtaatttagga
acagcattgactttttgctcgcaggaagagcgtaagttggttaacgatattcagaaactg
acaggtaagaaactcagtaaggttgagtttgctatctga
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