Burkholderia stagnalis: WT74_21830
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Entry
WT74_21830 CDS
T04885
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bstg
Burkholderia stagnalis
Pathway
bstg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bstg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WT74_21830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bstg03019
]
WT74_21830
Enzymes [BR:
bstg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WT74_21830
Messenger RNA biogenesis [BR:
bstg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WT74_21830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
B12-binding
AAA_25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOK55463
LinkDB
All DBs
Position
2:335094..336542
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AA seq
482 aa
AA seq
DB search
MSFASLGLIDPLLRNVQDLNYQTPTPVQAKAIPAVLGGKDIMAAAQTGTGKTAGFALPLL
QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIAYGKGLDLRFLAAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPARR
QTLLFSATFSDEIRTMAAGILRGPVNISVSPPNATASKIKQWVVPVDKRNKPDLFMHLVA
ENNWDHALVFVKTRKGVDYLAAMLDDAGYAVDTIHGDKPQPARLRALERFKAGEVQMLVA
TDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIE
ALIRQTLPREEEPGFEAEHRVPETSATGQLIKKPKKPKKPKVPQAAPGSAQVHGNKPRPQ
GGENKRKPAAQRAVGAGKGTSLSGGSPFSVQKPRSSKPAGKPAAGSRKPAGKPAGGRGKR
QP
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcctcgcttggcctgatcgatcccttgctgcgtaatgtgcaggatctcaat
taccagacacctacgccggtgcaggccaaggcgattcctgccgtgctcggcggcaaggac
atcatggccgcggcgcagacgggcacgggcaaaacggcgggttttgcgctgccgctgctg
caaaggctggtacagcacggcccggcggtgtccagcaaccgcgcgcgcgtgctggtgctg
gtgcctacgcgtgaactggccgaacaagtgctgcaaagcttcatcgcttacggcaaaggc
ctcgacttgcgatttctcgccgcctacggcggtgtgagcatcaacccgcagatgatgaag
ctgcgcaagggcgtggatgtgctcgttgccacgccgggccgcttgctggatctcaatcgc
cagaacgcggtgcagttcgatcaagtgcagacgctggtgctggatgaagccgaccgcatg
ctggatctgggctttgcgcgcgaactcgacgccgtctttgccgcattgcccgcccggcgc
cagacgctgctgttctccgccacattttccgatgaaatacgcaccatggcggcgggcatt
ctgcgcggcccggtcaatatcagcgtcagcccgcccaatgccacggccagcaagatcaag
cagtgggtggtgccggtcgataaaaggaacaagcctgatctgttcatgcacctcgtggca
gaaaacaactgggatcacgcgctggtgttcgtcaagacccgcaagggcgtggattacctg
gcggccatgctggacgacgcgggctatgcggtcgacaccatccacggcgacaaaccgcaa
cccgcgcgcctgcgtgcgctggagcgcttcaaggcgggcgaagtccagatgctggtcgcc
accgacgtggctgcgcgcgggctggatatcgacgatctgccgctggtgatcaacgtcgac
ctgccgatcgtggcgcaggactacgtgcaccgtatcggccgcaccggccgcgcgggcgcc
agcggcgtggcggtgtccctggtgtgcgccgacgaagcgccgcaactggccgcgatcgaa
gcgctgatccggcaaacgctgccccgcgaagaagagccgggtttcgaagccgaacaccgc
gtgccggaaaccagcgcgacggggcaactgatcaagaaacccaagaagccgaagaagccc
aaggtgccgcaagctgcgccgggttccgcgcaggtacacggcaacaaaccgcgcccgcaa
ggcggcgaaaacaagcgcaagcctgcggcgcagcgcgctgtcggcgcgggtaaaggcacg
agtttgtccggcggtagtcccttcagcgtgcaaaaaccacgcagcagcaaacccgccggc
aagccggctgcgggttcacgcaagccggccggcaaacccgctggcggccgtggcaaacgt
caaccctga
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