Burkholderia stagnalis: WT74_22460
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Entry
WT74_22460 CDS
T04885
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bstg
Burkholderia stagnalis
Brite
KEGG Orthology (KO) [BR:
bstg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bstg03016
]
WT74_22460
Enzymes [BR:
bstg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
WT74_22460
Transfer RNA biogenesis [BR:
bstg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
WT74_22460
Prokaryotic type
tRNA splicing ligases
WT74_22460
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Hexapep
Motif
Other DBs
NCBI-ProteinID:
AOK55567
LinkDB
All DBs
Position
2:complement(490769..491992)
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AA seq
407 aa
AA seq
DB search
MSEVDYQVMELAHGKPVKMWTQGVAVEEDARAQLRNTAQMPFIFKHVAVMPDVHLGKGST
IGSVIPTKGAIIPAAVGVDIGCGMMAARTTLAASDLPDSLAGLRSAIERAVPHGRAPGRR
DPGAWGNRAPQQVDEMWKVLAPGFRRIVDKYPKLEKTNHYVHLGTLGTGNHFIEVCVDEN
DSVWLMLHSGSRGVGNAIGSLFIELAQADMRQHIANLPDRNLAYFTEGSRHFDDYVEAVG
WAQDYARRNRQVMMDAVIEAARGVIGKPFGIDEHAVNCHHNYVQRERHFGEDVLVTRKGA
VSAQKGQLGIIPGSMGAKSFIVRGLGNPESFCSCSHGAGRSMSRTEAKRRFTVEDQVKAT
QGVECRKDAGVVDEIPMAYKDIDAVMAAQRSLVEVVHTLRQVVCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagtggattatcaagtgatggaactggcgcacggcaagccggtgaaaatgtgg
acccaaggcgtcgccgtcgaggaagatgcgcgcgcgcaactgcgcaacaccgcgcagatg
ccgttcatcttcaagcacgtcgccgtgatgccggacgtgcacctcggcaagggctcgacg
atcggcagcgtgattccgacgaagggcgcgatcattccggccgcggtgggcgtcgacatc
ggctgcgggatgatggccgcgcgcacgacgctcgccgcgtcggacctgccggattcgctg
gccgggctgcgcagcgcgatcgaacgcgcggtgccgcacggccgcgcgccgggccggcgc
gatcccggcgcatggggcaaccgtgcgccgcagcaggtcgacgagatgtggaaggtgctg
gccccggggttccgccggatcgtcgacaagtatccgaagctggagaagaccaaccactac
gtgcatctcggcacgctcggcaccggcaaccacttcatcgaagtgtgcgtcgacgagaac
gacagcgtgtggctcatgctgcacagcggctcgcgcggcgtcggcaacgcgatcggcagc
ctgttcatcgaactcgcgcaggccgacatgcggcagcacatcgcgaacctgccggatcgc
aacctcgcgtatttcaccgagggcagccggcacttcgacgactacgtcgaagcagtgggc
tgggcgcaggactacgcgcgccgcaaccgccaggtgatgatggacgcggtgatcgaggcg
gcgcgcggcgtgatcggcaagccgttcggcatcgacgagcacgcggtgaactgccaccac
aactacgtgcagcgggagcgccacttcggcgaggacgtgctcgtgacccgcaagggtgcg
gtgtccgcgcagaaggggcagctcgggatcattccgggctcgatgggcgcgaagagcttc
atcgtgcgcgggctcggcaatccggagagcttctgttcgtgcagccacggcgcggggcgc
tcgatgagccgtaccgaggcgaagcgccgcttcacggtcgaggaccaggtgaaggcgacg
cagggcgtcgaatgccggaaggacgcgggcgtggtcgacgaaattccgatggcctacaag
gacatcgacgcggtgatggccgcgcagcgcagcctcgtcgaggtcgtgcatacgctgcgg
caggtggtgtgcgtgaagggatag
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