Burkholderia stabilis: BBJ41_00260
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Entry
BBJ41_00260 CDS
T04946
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bstl
Burkholderia stabilis
Brite
KEGG Orthology (KO) [BR:
bstl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bstl03019
]
BBJ41_00260
Enzymes [BR:
bstl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BBJ41_00260
Messenger RNA biogenesis [BR:
bstl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BBJ41_00260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
NACHT
nSTAND3
T2SSE
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AOR66102
LinkDB
All DBs
Position
1:60041..64246
Genome browser
AA seq
1401 aa
AA seq
DB search
MSNVPKSPAPTRAKTPSARHPDGAADARQQQGQPPRQQQDKQAGQPPRGPRGDERRGEAR
QQAATNATNATNATNAPEARAPRRERPPRAVVAPNPVPPITYPESLPVSGKRDEIARAIA
GHQVVIVCGETGSGKTTQLPKICLDLGRGLGAGGTGLIGHTQPRRLAASSTGRRIAEELG
TPFGEVVGYKVRFTDNLAPGASVKLMTDGILLAETQTDPLLKAYDTLIIDEAHERSLNID
FLLGYLKEILPRRPDLKLIVTSATIDADRFARHFGTDERPAPVIEVSGRLYPVEMRYRPV
AEDRPAVKNAEGTASRDRVKTAREAERDLMDAIVDAVDELCREGPGDVLVFLPGEREIRE
AAEALRKHHPPHTEILPLFARLSAADQDKVFKASNARRIVLATNVAETSLTVPGIRYVVD
TGLARVKRYSYRNKVEQLQVESISQAAANQRAGRCGRVADGVCIRLYEESDYQARARFTD
PEILRSSLASVILRMKSLHLTAIESFPFLEPPPGRAIADGYQLLNELGAVDDDNALTPLG
RELARLPLDPRVGRMILAARDQQSLREVLIIASALSVQDPRDRPIEAQEQADQAHRRFAD
ERSEFLQWLKIWAWFEEAVAHKKSNRQLVDACRQNFLSHLRLREWRDVHSQLLTVVREHG
WRLNEVEATHEQVHLALLTGLLGNLGMKADDDPHYLGARGIKFYLWPGSALAKKAGRWVM
AAELVETSRLYARCLAKIEPEWVEKVGAHLLKKSLSEPHWEKRPAQVSAYERATLYGLTI
YHRRRVAFGKQDPARARELFIRGALVEGEFDTKLAFFAHNRKLLADIEQLEHKSRRQDVL
VDDELIYAFYDQAIPEGIHTGAAFERWYRDEVKKGGQPEDKLRLLYLSRDDLMRHEAAGV
TTELFPKRATMAGVEMALTYHFEPGTPRDGVTLAVPLYALNQVDARRCEWLVPGMLKEKV
QLLLKSLPQKLRRHCVPLPEYAAGFVERMGRERFGAGGLVEALIADVRGETQIAMKTADF
KLETLPAHLFMNFKVIDEHGRQLAMGRNLAQLRQELGAQAQQQFQKIAAASTIATTGSEA
EAPAAAAPATAGAAGRGAKAGKGTAPQTAAPAEAGATALYENLTTWNFGKLPELLEIRRR
GQTLYGYPALVDRGTHCDVEVFDSPEEAARIHRAGLRRLFALQLKEPIKFLEKNLPGLRE
MAMQYMSLGTQDELRDQLIDTALDRACLQDPLPDDDASFHARRDEGRSRLNLLAQEIARL
VGQILAEYAGLVKKLAQAKPFAQAHADLQQQLAALVGKRFVLDTPYVQLAHFPRYLKGIA
LRIDKLKADPARDAKQSGDLLPLAQQYQRAVSQRGGVADPRLTEFRWLLEELRISLFAQE
LRTPMPVSVKRLHKVWESMQR
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtacctaaaagtcccgcgccgacgcgggccaaaacgccgtcggcccggcac
ccggatggtgcggccgatgcgcgtcagcagcagggccagccgccgcgccagcaacaggac
aagcaggcgggccagccgccgcgcgggccgcgcggcgacgaacggcgcggcgaggcgcgc
cagcaagcggcgacgaacgcgaccaacgcgaccaacgcgaccaacgcgcccgaggcgcgc
gcgccgcgccgcgagcggccgccgcgcgccgtcgtggcgcccaaccccgtcccgccgatc
acgtatcccgaaagcctgcccgtgtcgggcaagcgcgacgagatcgcgcgcgcgatcgcc
ggtcatcaggtcgtcatcgtctgcggcgaaacggggtcgggcaagaccacgcagttgccg
aagatctgtctcgatctcggccgcggcctcggcgccggcggcacgggcctgatcggccat
acgcagccgcggcgtctcgctgcgtcgtcgaccggccgccggatcgccgaggaactcggc
acgccgttcggcgaggtggtcggctacaaggtgcgcttcaccgacaatctcgcgccgggc
gcgtccgtgaagctgatgacggacggcatcctgctcgccgagacgcagaccgacccgctg
ctgaaggcgtacgacacgctgatcatcgacgaggcgcacgagcgcagcctgaacatcgac
ttcctgctcggctacctgaaggaaatcctgccgaggcggccggacctgaagctgatcgtc
acgtccgcgacgatcgacgccgatcgcttcgcgcgccatttcggcaccgacgagcgcccg
gcgcccgtgatcgaggtgagcgggcggctgtatccggtcgagatgcgctaccgcccggtg
gccgaagatcgcccggcagtgaaaaatgccgagggcacggcgagccgcgatcgcgtgaag
accgcccgcgaggccgagcgcgacctgatggacgcgatcgtcgacgcggtcgacgagctg
tgccgcgaaggccccggcgacgtgctcgtgttcctgcccggcgagcgcgaaatccgcgaa
gcggccgaggcgctgcgcaagcaccatccgccgcacaccgagatcctgccgctgttcgcg
cggctctcggcggccgaccaggacaaggtgttcaaggcgtcgaacgcgcgccggatcgtg
ctcgcgaccaacgtggccgaaacgtcgctgacggtgccgggcatccgctacgtcgtcgat
accggtctcgcgcgcgtgaagcgctattcgtaccggaacaaggtcgagcagctgcaggtc
gagtcgatttcgcaggcagccgcgaaccagcgcgcgggccggtgcggccgtgtggccgac
ggcgtctgcatccgcttgtacgaggaaagcgactaccaggcccgcgcgcgcttcaccgat
ccggaaatcctgcgctcgtcgctcgcgtcggtgatcctgcggatgaagtcgctgcacctg
acggcgatcgaatcgttcccgttcctcgagccgccgcccggccgcgcgatcgcggacggc
tatcagttgctcaacgaactcggcgcggtcgacgacgacaacgcgctgacgccgcttggt
cgcgaactcgcacggctgccgctcgacccgcgcgtcgggcggatgattctcgccgcgcgc
gaccagcagtcgctgcgcgaggtgctgatcatcgcgagcgcgctgtccgtgcaggacccg
cgcgaccggccgatcgaagcgcaggagcaggccgaccaggcgcaccgccggttcgccgac
gagcgctccgaattcctgcagtggctgaagatctgggcgtggttcgaagaggcggtcgcg
cacaagaagtcgaaccgccagctcgtcgatgcgtgccggcagaacttcctgtcgcacctg
cggctgcgcgaatggcgcgacgttcattcgcagttgctgaccgtcgtgcgcgagcacggc
tggcggctcaacgaagtcgaggcgacccacgaacaggtgcatctggccctcttgaccggc
ctgctcggcaacctcggcatgaaggccgacgacgatccgcactacctcggcgcgcgcgga
atcaagttctatctgtggccgggctccgcgctggcgaagaaggccgggcgctgggtgatg
gcggccgaactggtcgagacgagccggctgtacgcgcgctgcctcgcgaagatcgagccg
gagtgggtcgagaaggtcggtgcgcacctgctgaagaagtcgttgtcggagccgcattgg
gaaaagcgtccggcgcaggtcagcgcgtacgagcgcgcgacgctgtacgggctgacgatc
taccaccgccggcgcgtcgcgttcggcaagcaggacccggcgcgcgcgcgggagctgttc
atccgcggcgcgctcgtcgaaggcgagttcgacacgaagctcgcgttcttcgcgcacaac
cgcaagctgctcgccgacatcgagcagctcgagcacaagtcgcggcggcaggacgtgctg
gtcgacgacgagctgatctacgcgttctacgaccaggcgattccggaagggattcacacg
ggcgccgcgttcgagcgctggtatcgcgacgaggtgaagaagggcggccagcccgaggac
aagctgcggctgctgtacctgtcgcgcgacgacctgatgcgccacgaggcggcgggcgtg
acgaccgagctgttcccgaagcgcgcgacgatggccggcgtcgagatggcgctcacgtac
cacttcgagcccggcacgccgcgcgacggcgtgacgctcgcggtgccgctctacgcgctg
aaccaggtcgatgcgcgccgctgcgagtggctcgtgccggggatgctgaaggaaaaggtg
cagctgctgctgaagtcgctgccgcagaagctgcgccgccactgcgtgccgctgcccgag
tacgcggccggtttcgtcgagcggatgggccgcgagcgcttcggcgcgggcgggctcgtc
gaggcgctgatcgccgacgtgcgcggcgagacccagatcgcgatgaaaacggccgacttc
aagctcgagacgctgcccgcgcacctgttcatgaacttcaaggtgatcgacgagcacggc
cgccagctcgcgatggggcgcaatctcgcgcagcttcgccaggagctgggcgcgcaggcg
cagcagcagttccagaagatcgcggcggcgtcgacgatcgcgaccaccggctcggaggcc
gaggcgcctgccgctgcggcgcccgccaccgccggcgctgccggccgcggcgcgaaggcc
ggcaagggcacggcgccgcagacggccgccccggcggaagctggcgcgacggcgctgtac
gagaacctgacgacgtggaatttcggcaagctccccgagctgctggagatccgccggcgc
ggccagacgctgtacggctacccggcgctcgtcgatcgcggcacgcattgcgacgtcgag
gtgttcgattcgccggaggaggccgcgcgcatccaccgggccggcttgcggcggctgttc
gcgctgcagctgaaggaaccgatcaagttcctcgagaagaacctgccgggcctgcgcgag
atggcgatgcagtacatgtcgctcggcacgcaggacgagttgcgcgaccagctgatcgac
acggcgctcgaccgcgcgtgcctgcaggacccgctgcccgacgacgacgcgagcttccac
gcgcgccgcgacgagggccgcagccgcctgaacctgctcgcgcaggaaatcgcgcggctc
gtcgggcagatcctggccgaatacgcgggcctcgtgaagaaactcgcgcaggcgaagccg
ttcgcgcaggcgcacgcggatctgcagcagcagctcgccgcgctggtcggcaagcgcttc
gtgctcgacacgccttacgtgcagcttgcgcacttcccgcgctacctgaagggcatcgcg
ctgcggatcgacaagctgaaggccgatccggcgcgcgacgcgaagcagtccggcgacctg
ctgccgctcgcccagcagtaccagcgcgcggtgtcgcagcgcggcggcgtcgccgacccg
cggctcacggaattccgctggctgctcgaggaattgcggatttcgctgttcgcgcaggaa
ctgcgcacgccgatgcctgtctctgtcaagcgtctgcacaaggtctgggagtcgatgcag
cgctag
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