Bacteriovorax stolpii: C0V70_00245
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Entry
C0V70_00245 CDS
T05263
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bsto
Bacteriovorax stolpii
Pathway
bsto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C0V70_00245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsto03019
]
C0V70_00245
Enzymes [BR:
bsto01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C0V70_00245
Messenger RNA biogenesis [BR:
bsto03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C0V70_00245
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
ERCC3_RAD25_C
Utp25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
AUN96558
UniProt:
A0A2K9NM23
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All DBs
Position
complement(53946..55268)
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AA seq
440 aa
AA seq
DB search
MNQDLPKTFSELNLIDPLKQALSEAGYNTPTPIQAQAIPSLLHGKDLLGCAQTGTGKTAA
FALPILHRLVESNKKPTPRHARVLVLTPTRELAIQVHESFVTYGKNLKLKYAVIFGGVGQ
QPQVKSLAHGVDVLVATPGRLLDLINQGFLKLNALEVFVLDEADRMLDMGFIHDIKRVLK
ILPPKRHNLFFSATMPPEIEKLANSILVNPTRVEVTPVSSTAELIAQKVMFVERENKRPL
LKHILDNKALKRVIVFSRTKHGANRISEYLAKSGILSEAIHGNKSQTARQKALENFRTGK
IRVLIATDIAARGIDIDEITHVINFDLPNVSEDYVHRIGRTARAGASGEAISFCDADEKA
FLKSIEKLIGKTIEVVEDQPFHSDNVVSAKLLSHGKAKALIDAENTLKPDRSRHKGGRFH
RGGRNPAPKKEQGHKQGSKT
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagacctacctaagacattttcagaactaaatcttattgaccctttaaaacaa
gccttaagtgaagccggatacaacaccccgacaccgatccaagcgcaagctattccatcg
cttctgcatggaaaagatctgttaggttgtgctcagactggaactggtaaaacagctgcc
tttgctctgcccatccttcaccgcttggttgaatccaataaaaaaccaactccacgtcac
gccagagttttagtgttgactcctacaagagagttggcgattcaagttcacgaaagtttt
gtgacttatggaaaaaatctcaaattaaaatatgccgttatctttggtggtgttggccaa
caacctcaagtcaagtctcttgctcacggggttgatgttctagtggccactcctggtcgc
ttattagatttaattaaccaaggttttttaaaacttaacgcccttgaagtttttgtttta
gatgaagcagaccgcatgcttgatatggggttcatccacgacattaaaagagtcctgaaa
attcttccaccaaaaagacataacttatttttctcagcgacaatgccgcctgagattgaa
aaacttgccaactctattttggttaatccaacaagagttgaggtcacccctgtttcatca
acagctgaactcattgctcaaaaagttatgttcgttgaacgcgaaaacaagcgccctctt
ctaaaacatatcttagataacaaagctcttaagcgagtgattgttttctctcgcaccaaa
cacggtgcaaatagaatttcagaatacctggcaaaaagtggcattctgagtgaagccatt
catggaaacaaatcgcaaacggccagacaaaaggcgctcgagaatttccgcactggaaaa
atccgcgtgcttattgctaccgatattgccgctcgcggaattgatatcgatgagatcact
catgtcatcaattttgatttgccaaatgtcagtgaagactatgtccacagaattggaaga
actgcacgcgcaggcgcgagcggtgaagccatttcattttgcgatgccgatgaaaaggcc
ttcttgaaatccattgaaaaacttattggaaagactattgaggtggtcgaagaccaacct
ttccattcggacaacgttgtcagcgcaaagcttctttctcacggtaaggcgaaagcatta
atcgatgcagaaaacacgctaaaacctgatcgttctcgtcataaaggcgggcgttttcat
aggggaggaagaaaccctgctcctaaaaaggaacaaggacacaaacaaggaagtaaaact
tag
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