Bacillus stercoris: QI003_23085
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Entry
QI003_23085 CDS
T09305
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bstr
Bacillus stercoris
Pathway
bstr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bstr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QI003_23085 (dbpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bstr03019
]
QI003_23085 (dbpA)
03009 Ribosome biogenesis [BR:
bstr03009
]
QI003_23085 (dbpA)
Enzymes [BR:
bstr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QI003_23085 (dbpA)
Messenger RNA biogenesis [BR:
bstr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QI003_23085 (dbpA)
Ribosome biogenesis [BR:
bstr03009
]
Prokaryotic type
rRNA helicases
QI003_23085 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WGV95340
LinkDB
All DBs
Position
complement(4582825..4584264)
Genome browser
AA seq
479 aa
AA seq
DB search
MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL
CELADWDENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQK
SHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTML
FSATLPQDIEKLSRQYMQNPEHIEIKAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENP
DSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVA
ARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG
FEIQKIEAPSQEEVARKKPEFLAKMNDRPESKKDKSEELNKDIMKLYFNGGKKKKIRAVD
FVGTIAKIDGVSADDIGIITIMDNASYVEILNGKGPHVLQVMKNTTVKGKKLKVNKANK
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgagtcattttaaaaactatcaaatcagtcatgacattttacgagcactggaaggactg
ggatatacagaaccgaccaaggtgcagcagagcgtgatccccgctgcccttgaacgaaag
gatcttgtcgtcaaatcacagacgggaagcgggaaaacggcttcgttcgggattcctctc
tgtgagctggcggattgggatgaaaacaagccgcaggcgcttattttaacaccgacccgt
gagcttgcggtgcaagtaaaagaggatatcacgaacatcggacgatttaaacgaatcaaa
gcgacagctgtatttggaaagtcctcctttgataaacaaaaagccgagcttaagcaaaaa
agccacattgttgtcggcacgccgggacgtgttctggatcatatcgaaaaaggcacgctg
ccgttggatcgtctctcttatttggtcattgatgaagcggatgagatgctgaatatgggc
ttcatcgagcaggtcgaggcgattatcaagcatctgccgactgagcgcacgacgatgctg
ttttcagcgacgctgccgcaggatatcgagaagctgagccgtcaatatatgcaaaacccg
gagcatatcgaaatcaaagcggccggcctaaccacaagaaatattgaacatgcggtgatt
caagtaagagaagagaataaattttcattgctgaaagatgtgctgatgacggagaatccc
gatagctgcatcattttctgccgaacgaaagagcacgtcaatcagctgaccgatgaattg
gatgacttaggatatccatgcgataaaattcacggcggaatgattcaggaagaccggttc
gacgtcatgaatgaatttaaacggggcgagtaccgttacttagtcgcgacggatgtcgcc
gcgcgcgggattgatattgaaaatatctcccttgtcatcaactatgatctgccgcttgaa
aaagaaagctatgtccaccgcacgggccgaacgggacgcgcagggaacaaaggaaaggcc
atttcgtttgtcacggcctttgaaaaacggtttttagccgacattgaagaatatatcgga
tttgaaatccaaaaaatagaagcaccttctcaagaggaagtggcaaggaagaaaccagaa
tttctagctaaaatgaatgaccgtccggaaagcaaaaaggacaaaagcgaagagctgaat
aaagacattatgaagctgtattttaacggcggaaagaaaaagaaaatcagagccgttgat
tttgtaggaacgattgccaaaattgatggtgtgtcagctgatgacatcggcatcatcacg
attatggataacgcctcatacgttgagattttaaatgggaaaggacctcatgttctccaa
gtgatgaagaacacaaccgtcaaagggaaaaagctcaaggtgaataaagcgaataaatga
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