Bacillus subtilis subsp. subtilis 168: BSU11820
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Entry
BSU11820 CDS
T00010
Symbol
yjcD
Name
(RefSeq) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bsu
Bacillus subtilis subsp. subtilis 168
Pathway
bsu03420
Nucleotide excision repair
bsu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BSU11820 (yjcD)
03430 Mismatch repair
BSU11820 (yjcD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsu03400
]
BSU11820 (yjcD)
Enzymes [BR:
bsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSU11820 (yjcD)
DNA repair and recombination proteins [BR:
bsu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BSU11820 (yjcD)
MMR (mismatch excision repair)
Other MMR factors
BSU11820 (yjcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_12
AAA_16
DEAD
Motif
Other DBs
NCBI-GeneID:
939813
NCBI-ProteinID:
NP_389064
Pasteur:
BG13157
UniProt:
O31626
A0A6M3Z9J8
LinkDB
All DBs
Position
complement(1253713..1255866)
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AA seq
717 aa
AA seq
DB search
MLRLNIADPPEFIHRQPGDFPACEEACEPKPSKEGKKEDDQESGVIRLPKGKAIAADPSP
AVTEWHRPRSIKPGTPFVPKTIEPDTSLFPSVGLNTDQLKAVTETEGPLLVLAGAGSGKT
RVLTARAAHMIEHLGIPPENMLLVTFTTKAVAEMKERMANQYGLQPAKVRRIVTGTFHSL
FYKILYHSNSAKWNGEHLLKMEWQREQYIKKALYEEGIDEKESPVDQALQQIGFWKNTYV
PNERIPLKDEWEKQVYRLYEHYERQKKEHSQFDFDDMASACYELFIERPDLLEQYQSRFT
YILIDEFQDINPVQYKIMQMLASPEQNLCCVGDDDQSIYAFRGSNPSFILDFQKDYPGAK
TIYLTANYRSTHPIVSSADIVVKKNKNRYAKTLEAARDDIQVPVLFYPYDEEEEATMVVS
DIKEKIQNGASPEDFAVLYRTNSGGRAIYERLHQSSIPYTADRGVQSFYSRRIVRQILAY
LYASQNEDDTEAIKHLLPALFLKQSALNTLKALSITEDCTMIKALAKLPDLKPFQLDKIK
KIVPFFASLRTMKPVEAITFAEGKMGFSEYLKKRGNEGNKLEKGSDDLRDIKVVAKKFKT
IPDFLAHVDHMRAAEKNRTDEHGVQLMTIHRSKGLEFKTVYVLGTVDGSIPHDFSLETAR
KGDEAALEEERRLLYVAMTRAKQHLYLSCPANRRGKTANRSRFLYPLLQKARQPLHH
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
ttgttacggcttaacatcgccgatccgccagagtttatccatcgccagccaggcgatttt
ccggcatgtgaggaggcgtgcgaaccgaagccctctaaagaggggaaaaaagaagatgat
caggaatctggtgtcattcgtttacccaagggaaaagcgatcgccgctgacccgtcccca
gctgttacagaatggcaccgtcctagaagcattaaaccaggaacaccatttgtgccaaaa
acaatagaacccgatacgagcctttttccgtctgtcggtttaaacacggatcagctgaaa
gctgtcacggaaacagagggcccgctcctcgtgcttgcaggtgcggggagcggaaaaaca
cgggtactgacagcccgtgccgcccacatgatcgaacacttaggcataccgcctgaaaat
atgctgcttgtcacctttacaacaaaagctgtcgctgaaatgaaagagcgtatggcgaac
cagtacggattacagccggcaaaagtcagaagaattgtgacaggaacattccacagtctg
ttttataagatcttgtatcactctaattctgctaaatggaacggtgagcatctgctgaaa
atggagtggcagcgggaacaatatatcaaaaaagcactctatgaagaaggcatcgatgag
aaagaatccccagttgaccaagccctgcagcagatcggtttttggaaaaacacttatgtc
ccaaatgaacgcatccctctaaaagatgagtgggaaaaacaagtttatcgtttatatgaa
cattatgaacgccagaaaaaagaacacagccaatttgattttgatgacatggcttcagcc
tgctatgaattgtttatcgagcggcctgaccttctggaacaatatcaatctcggtttacg
tatatcttaattgatgagtttcaggacattaatccggttcaatacaaaatcatgcaaatg
ctcgccagcccggagcaaaacctgtgctgtgtcggagacgatgaccagtccatctacgcg
tttcgcggaagcaatccgtctttcattcttgattttcaaaaggattatccgggagcgaag
acgatctatttaactgcgaactacaggtctacgcacccgatcgtctctagtgctgatatc
gttgtgaaaaagaacaaaaacagatatgccaaaacgcttgaagcggcccgcgatgacatt
caggtccctgtgctgttttatccttatgatgaagaggaagaagccacaatggtcgtttcc
gatatcaaagaaaaaattcaaaatggagccagtccagaagactttgcggttctttaccgc
acaaacagcggaggccgtgctatatatgaaaggcttcatcaatcgtcaattccgtataca
gctgaccgcggcgtccaatcgttttacagcagacggatcgtccgccagattctcgcctac
ttgtacgccagccaaaatgaggatgacaccgaggcgattaaacacttgcttcccgccttg
tttttaaaacagtccgctttgaatacgctgaaggcgctctcgattacagaggactgtacc
atgatcaaagcgctggccaaattgcctgatctgaagccattccagctggacaaaatcaag
aaaatcgtaccgttttttgcaagcctccgcacaatgaaacccgtagaagccatcaccttt
gcagaaggaaaaatgggcttctccgagtatttaaaaaagcggggcaatgagggcaacaag
ctggaaaaaggctctgatgacctgcgcgacatcaaggttgtcgccaagaagttcaaaacg
attcctgactttcttgcccacgtagaccatatgagggccgctgagaaaaacagaacggat
gaacatggcgttcagctgatgaccattcaccggtcaaaaggccttgaattcaaaacagtc
tacgtgttaggcactgtagatggctcgattccgcacgatttctcattagaaacggcaaga
aaaggagacgaggccgctcttgaggaggaaagacgccttttatatgtagccatgacccgg
gcgaaacagcatttatatttgtcttgccctgctaacaggcgcggcaaaacagccaaccgc
tcaagatttttgtatcccctgctacagaaagcaagacagcccttgcatcattaa
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