Bacillus subtilis subsp. subtilis 168: BSU17340
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Entry
BSU17340 CDS
T00010
Symbol
hfq
Name
(RefSeq) RNA-binding protein Hfq
KO
K03666
host factor-I protein
Organism
bsu
Bacillus subtilis subsp. subtilis 168
Pathway
bsu02024
Quorum sensing
bsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSU17340 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
BSU17340 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsu03019
]
BSU17340 (hfq)
03036 Chromosome and associated proteins [BR:
bsu03036
]
BSU17340 (hfq)
Messenger RNA biogenesis [BR:
bsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
BSU17340 (hfq)
Chromosome and associated proteins [BR:
bsu03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
BSU17340 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
Hfq_1
LSM
Motif
Other DBs
NCBI-GeneID:
940073
NCBI-ProteinID:
NP_389616
Pasteur:
BG13416
UniProt:
O31796
A0A6M3ZB27
Structure
PDB
PDBj
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All DBs
Position
1867373..1867594
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AA seq
73 aa
AA seq
DB search
MKPINIQDQFLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLLESEGKQQLIYKHAIS
TFAPQKNVQLELE
NT seq
222 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgattaatattcaggatcagtttttgaatcaaatccggaaagaaaatacgtat
gtcactgtttttttgctgaacggctttcagttgcggggccaggtgaaaggctttgataac
tttaccgtattgttggaatcggaaggtaagcagcagcttatatataaacatgcgatctca
acgtttgcgccgcaaaaaaacgtccagcttgaactcgaatag
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