Bifidobacterium subtile: BS3272_02420
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Entry
BS3272_02420 CDS
T07068
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bsue
Bifidobacterium subtile
Pathway
bsue03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsue00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BS3272_02420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsue03019
]
BS3272_02420
03400 DNA repair and recombination proteins [BR:
bsue03400
]
BS3272_02420
Enzymes [BR:
bsue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BS3272_02420
Messenger RNA biogenesis [BR:
bsue03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BS3272_02420
DNA repair and recombination proteins [BR:
bsue03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BS3272_02420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
QOL36850
LinkDB
All DBs
Position
535941..538064
Genome browser
AA seq
707 aa
AA seq
DB search
MTPSHPTESLVTELQQIESPRAESREAEPYRAQSQQAALDALHRYFGYDSFRTGQAGLVD
AILAGRDVLGVMPTGAGKSICYQIPATLLPGLTIVISPLISLMRDQVDALNDLGIPAAYI
NTTQDMDEQGMVLAQAARGDVKLLYVAPERLETERMRSFAARVPISLITVDEAHCVSQWG
QDFRSSYLGIGEFIAALPSRPTVAAFTATATQHVRRDIVALLNLQHPQVTVTGFDRPNLF
FDILRMPTNAKNVWIANYAIDHADESGIVYCATRKETEALAGLLAERGVPAVAYHGGMSA
QNRNDAQRAFVTDAASVVVATNAFGMGIDKSNVRYVIHHNMPESIEAYYQEAGRAGRDGE
PSRCTLLWNDSDIVTRRRLLDMDSQNDRMSEDEREVVRLSKRRLLDAMIGYCRTTECLHA
YMTRYFADPTAGAPAGTGAAHAEAAETAQSAANANAAQSAPSQDESAHAASDDDPTGNDP
TPAKPNGCGNCANCLSTFATIDVTDIARSISRCVHDLNQSFGMGKIVAVLRGSKTQDLLA
RHLDSCPSYGVLEQVPQARVRDVLNQMTTDGFLTVSEGRLPVVHFGPRAAVTASGDFHYE
IKRVERPAAVGGRIGQAKRSGQTLGSDASMDTEVDEPLFERLRVLRRDIAREIGKPPYIV
FSDKTLRDMTRIRPVTNAQFLAVNGVGENKLNLYGKRFMEAIRSFEE
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgacaccgtcgcatccaactgagtcgcttgtaaccgagctgcagcagatcgaatcgcct
cgcgctgaatcgcgcgaggccgagccgtatcgcgctcaatcgcagcaggccgcgctcgac
gcgctgcaccggtattttggctacgactcattccgcaccgggcaggcggggctggtcgac
gcgatccttgccgggcgcgacgtgctgggcgtcatgcccaccggcgcgggcaagtcgatc
tgctaccagattccggccacgctgctgccgggactgaccatcgtcatctcgccgctgatc
tccctgatgcgcgatcaggtcgacgccctgaacgacctcggcattccggcggcgtatatc
aacaccacgcaggatatggacgagcagggcatggtgctcgcccaggcggcgcgcggcgac
gtgaagctgctctatgtcgcgccggaacgcctggaaaccgaacggatgcgctctttcgcg
gcgcgagtgccgatttcgcttatcaccgtggacgaggcgcattgcgtctcgcaatggggc
caggatttccgttcgtcgtatctgggcattggcgaattcatcgccgccttgccgagccgc
ccgaccgtggccgcgttcaccgcgaccgccacgcagcatgtccggcgcgatatcgtcgcg
ctgctgaacttgcagcatccgcaggtgacagtgaccggcttcgaccggccgaatctgttc
ttcgatattctgcgcatgccgacgaacgccaagaacgtctggatagcgaactacgccatc
gaccacgccgacgagtccggcatcgtctactgcgccacgcgcaaggagaccgaggcgctc
gcggggctgctggccgagcgcggcgtgcccgcggtcgcctaccacggcggcatgtcggcg
cagaaccgcaatgatgcccagcgcgccttcgtcaccgatgccgcgtcggttgtcgtggcc
acgaacgccttcggcatgggcatcgacaaatccaatgtgcgctacgtcatccaccacaac
atgcccgaaagcatcgaggcctactatcaggaggcgggccgtgccgggcgcgacggcgaa
ccgagccgttgcacgctgctatggaacgacagcgatatcgtcacgcgccgccgcctactc
gacatggattcgcaaaacgaccgcatgagcgaggatgaacgcgaggtcgtgcggctgagc
aagcgccggctgctcgacgcgatgatcggctactgccgtacgaccgaatgcctgcacgcc
tatatgacgcggtattttgccgacccgaccgctggcgctccggcagggacgggcgctgcg
catgccgaagctgccgaaacggcgcaatccgccgccaacgcaaatgcggcgcaatccgcg
ccttcccaagacgaatcagcgcatgccgcttcggacgacgacccaacgggcaacgacccg
acgccagccaaacccaacggctgcggcaattgcgccaactgcctgagcaccttcgccacc
atcgacgtcaccgacatcgcgcgctcgatcagccgatgcgtgcatgacctcaatcagagc
ttcggcatgggcaagatcgtggccgtgctgcgaggctcgaagacccaggatcttctcgcc
cgtcacctcgactcctgcccgagctatggggtgctcgaacaggtgccgcaggcccgcgtg
cgcgacgtgctcaaccagatgaccacggacggcttcctgaccgtgtccgaagggcggctg
cccgtcgtgcatttcgggccgcgagccgcagtgacggccagcggcgatttccattatgag
atcaagcgtgtcgagcggcctgctgcggttggcgggcgaatcggtcaggcgaagcggtcc
ggacagacgcttggctcggatgccagtatggataccgaggtcgacgaaccgctgttcgaa
cgactgcgggtcctgcgccgcgatatcgcgcgtgagatcggcaagccgccctacatcgtc
ttctccgacaagaccctgcgtgatatgacgcgcattcgcccagtgaccaatgcgcagttc
ctcgcagtcaacggcgtgggggagaacaagctcaacctctacggcaagcgctttatggaa
gccatccgctcgttcgaagagtag
DBGET
integrated database retrieval system
