Bifidobacterium subtile: BS3272_06340
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Entry
BS3272_06340 CDS
T07068
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bsue
Bifidobacterium subtile
Pathway
bsue03420
Nucleotide excision repair
bsue03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bsue00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BS3272_06340
03430 Mismatch repair
BS3272_06340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsue03400
]
BS3272_06340
Enzymes [BR:
bsue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BS3272_06340
DNA repair and recombination proteins [BR:
bsue03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BS3272_06340
MMR (mismatch excision repair)
Other MMR factors
BS3272_06340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
DUF3013
Motif
Other DBs
NCBI-ProteinID:
QOL35588
LinkDB
All DBs
Position
complement(1475645..1478380)
Genome browser
AA seq
911 aa
AA seq
DB search
MLTDPDFIARDAQELIADLNPEQAQAVQYEGPALLIGAGAGSGKTRVLTRRIAWILTRFG
AWPSQILAITFTNKAAAEMRERLATLIGPVAGRMWVSTFHSACVRMLRRDGKSIGLNSGF
SIYDTADCERLIKLIGADLNIDLKRYTPRTILSRISDYKNNLQSWQTQLKTYAADYKPGQ
RGYQLGRFGNVEELYAVVYAEYQHRLAAANAVDFDDLIVRTVELLRSDPMVAEYYHHKFR
YILVDEYQDTNHAQYELIRELGGVDAGEQRSSSAVAAGKQGPAWVTVVGDSDQSIYAFRG
ADISNIRDFEKDFPRAKTIMLEQNYRSTQTILDAANAVIANNADRKPKKLWTALGKGEPI
VGYAADNAQQEAAWIAEEIARLSSEENVQYSDVAIMYRANAQSRSLEEALINAGIPYQLV
GGTRFYERREIKDAIAYLQAIVNPADSVNMRRIMNVPKRGLGARAEALVAGYADAHDTSF
WQGVEHMDEIDGMPTRTAKMLSGFRDIMRSLAAFAQGHNDKPSEVVAEVLNKSGLLAELQ
RSEDPQDASRVENLSQLQSVAAEFEQNTPDATLGAFLETTALVADSDQLPSEGEDSGKVT
LMTLHTAKGLEYPVVFLTGMEQGTFPHSRSLEDNDELSEERRLAYVGITRARRRLYLTRA
AVRAQWGQANEMLPSQFLDEIPDTLIEWKRREASAERMRAGWRSDDDDEFGGWADDDDFS
GGGFGVTSRGGSSSRGGGSSYGSGYGSGYGASYGTGKSGYGSRSGSGSYGSGSRYGSGSG
SSYGSGGSGSGYGSRSGSSYGSHGSSSSYGSSSRRGSGSTYGGSGSRGGKVTTRRIAPTA
ASKASPASSIAKDNKLDIADFSIGDKISHDQYGLGTILDTQDKGRNSVITVDFGSDGVKR
LMLRVAPIEKL
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
gtgctgacagatcccgatttcatcgcacgcgacgcgcaggagctgattgcggatttgaac
cccgagcaggcgcaggccgtgcagtacgaagggccggcgctgctcatcggcgcgggcgcg
ggatcgggcaagacgcgcgtgcttacccggcgcatcgcatggattctgacgcgcttcggc
gcgtggcccagccagattctggccatcaccttcaccaacaaggccgcagcggaaatgcgc
gaacgccttgcaacgcttatcggcccggtggccgggcgcatgtgggtctccaccttccat
tcggcatgcgtgcgcatgctgcggcgcgacggcaaatcgatcggcctgaactccggcttc
tccatctatgacacggctgactgcgagcggctcatcaagctcatcggcgccgacctgaac
atcgatctcaagcgctacacgccgcgcaccatcctcagccgcatctccgactacaagaac
aatctgcaaagctggcagacccagctcaagacctatgctgccgactacaagcccggtcag
cgcggctaccagctcgggcgcttcggcaatgtcgaggaactgtatgccgtggtgtacgcc
gagtatcagcatcgtctcgccgccgcgaacgccgtggacttcgacgatctgatcgtacgc
accgtcgagctgctgcgcagcgatccgatggtcgcggagtattaccaccacaagttccgc
tatattctcgtcgacgagtatcaggacacgaaccacgcccagtacgagctcatccgcgag
ctcggcggcgtggatgcgggggagcagcgctcttccagcgcggtcgcagcaggcaagcag
gggccggcatgggtgacggtcgtgggcgactcggaccagtcgatctacgccttccgcggc
gccgatatcagcaatatcagggatttcgagaaggatttcccgcgcgcgaaaaccatcatg
ctcgagcagaactaccgctccacgcagacgattctcgacgccgccaatgcggtcatcgcc
aacaatgcagaccgcaaacccaaaaaactctggaccgcgttgggcaaaggcgagccgatc
gtgggctatgcggccgacaatgcgcagcaggaggccgcgtggatcgccgaggagatcgcg
cggctgtccagcgaggaaaacgtgcaatacagcgacgtggcgatcatgtaccgcgccaac
gcgcagtcgcgctcgcttgaggaggcgctcatcaacgccgggatcccataccagctcgtg
ggcggcacacggttctacgagcggcgcgaaatcaaggacgccatcgcttacctgcaggcc
atcgtgaatccggccgacagcgtgaacatgcgccgtatcatgaacgtgcccaagcgcggg
ctgggcgcgcgggccgaagcgctcgtggccggctacgccgatgcgcatgacacgagcttc
tggcagggcgtcgagcatatggacgagatcgacggcatgccgacgcgcaccgccaaaatg
ctctctggattccgcgacatcatgcgctcgctggctgcctttgcgcagggccacaacgac
aagccgtccgaggtcgttgccgaagtgctgaacaagtcggggctgctggctgagctgcag
cgttctgaggacccgcaggacgcttcgcgcgtcgaaaacctttcgcagctgcaatccgtg
gccgccgaattcgagcagaacacgcccgacgccacgctcggcgcattcctcgaaaccacg
gcgctcgtggcggattccgaccagctgccctccgaaggcgaggacagcggcaaggtcacg
ctcatgaccctgcatacggccaagggcttggaatacccggtcgtgttcctcaccggcatg
gagcaggggacattcccgcattcaaggtcgctggaggacaacgacgagctgagcgaggag
cgcaggcttgcgtacgtcggcatcacgcgcgcgcggcgtcggctctacctcacccgtgca
gccgtgcgcgcgcaatgggggcaggccaacgagatgctgcccagccagttccttgacgag
atacccgacacgctgatcgagtggaagcgccgcgaagccagcgccgagcgcatgcgtgcg
ggctggcgttcggatgacgatgacgaattcggcggctgggccgatgacgacgacttctcc
ggcggcggcttcggcgtcacgagccgcggtgggtcatcgtctcgcggcggcggttcgagc
tatggatccggttacggatcgggttatggcgcaagctatggtaccgggaagtcggggtat
ggctcccgttctggttccggctcgtatggctccggttcgcgctacggctccggatcaggc
tcatcctacggctcgggtggttcgggctcggggtacggctcgcgttccggctcctcgtac
ggttcccacggttccagcagctcctatggctcctcgtcacggcgcggaagcggttcgacc
tatggcggttccggctcacgcggcggcaaggtgacgacgcgccgcatcgcgcccacggct
gcctccaaggcgtccccagcctcctcgatcgccaaggacaacaaactggatatcgccgat
ttcagcatcggcgacaagatctcgcacgatcagtacggtctcggcacgattctcgacacg
caggacaaaggccgcaactcggtcatcacggtcgatttcggctccgatggcgtcaagcgg
cttatgctgcgcgtcgcgcccatcgagaagctgtga
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