Bifidobacterium subtile: BS3272_07135
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Entry
BS3272_07135 CDS
T07068
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bsue
Bifidobacterium subtile
Pathway
bsue03420
Nucleotide excision repair
bsue03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bsue00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BS3272_07135
03430 Mismatch repair
BS3272_07135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsue03400
]
BS3272_07135
Enzymes [BR:
bsue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BS3272_07135
DNA repair and recombination proteins [BR:
bsue03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BS3272_07135
MMR (mismatch excision repair)
Other MMR factors
BS3272_07135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_12
Motif
Other DBs
NCBI-ProteinID:
QOL35714
LinkDB
All DBs
Position
complement(1658966..1660504)
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AA seq
512 aa
AA seq
DB search
MAAMNASAEAIVQGLDDAQLAAATTLRGPVRIIAGAGAGKTRTVTRRIAYACASGAWDPA
RTLAVTFSVKAAAEMRSRLASLGVGEQVTASTFHAAALHQLRQVWPDICEAPFPHVIREP
GHAIDQCMRRVLGTDQFGDAEVRAVLAEINWCKVSLIAPSDYPRVCAATHRQPPAGMEVD
RLVDVMQEYERVKTSHGEIDFNDILLLTCHILDDFPEEAAHIRAAIGWLTVDEYQDVSPL
QHRLMGLWLNGNRDVCVVGDPAQTIYSFAGASSYDLLGFASEFAPLSADIDLGIDYRSTP
QVVGCANRVLSAAANREDYLKLTAARQGGARVSRTVYDDDDEEARGVAMRIARMVSQGAV
PDDFAVLTRINAQHRVVCRALREQDLHYRVRRDAGWQHSALEDEGAGPDQAQSQARQEAL
EQIGAGAQQGTQQGVTLSTIHAAKGLEFKHVFIIGCSEGLLPFSSPSPGEQLEEERRLMY
VGVTRAEDTLHLSYARRKDSSGGIARVPSRFL
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atggcagctatgaacgcatcagccgaagccatcgtgcaggggcttgatgacgcccaattg
gccgccgccacgaccctgcgcggcccggtgcgaatcatcgccggggccggcgcgggcaag
acgcgcaccgtgacgcgccgcatcgcctacgcctgcgcgagcggggcctgggaccctgcg
cgcacgctcgcggtgaccttctcggtcaaggccgcagccgagatgcgatcgcggctcgct
tccttgggcgtcggcgagcaggtgacggcttcgaccttccacgcggcggcgctccaccag
ctgcgccaggtctggccggacatctgcgaggcgccgttcccgcatgtgattcgcgagccg
ggccatgccatcgatcagtgcatgcgccgggttctgggcaccgaccagttcggcgacgcc
gaagtgcgcgcggttctggctgaaatcaactggtgcaaggtgtcgcttatcgcgccgtcc
gactacccgcgggtgtgcgcggccacgcatcgccagccgcctgccggcatggaagtcgat
cggctcgtcgatgtgatgcaggaatacgagcgcgtgaagacctcacatggggagattgat
ttcaacgatatcttgttgctgacctgccatatcctcgatgacttcccggaggaggccgcg
catattcgcgccgccatcggctggctcaccgtggacgagtaccaggacgtttcgccgctg
cagcatcggctgatgggcctgtggctgaacggaaaccgcgacgtgtgcgtggtgggggac
ccggcgcagaccatctattcctttgcgggggcgagcagctacgatctgctgggcttcgcc
agcgaattcgcgccgttgagcgcggacatcgacctcggcatcgactaccgctccacgccg
caggtcgtgggctgcgcgaatcgtgtgctgtcggcggcggccaatcgcgaggattatctc
aaactgacggcggctaggcagggcggcgcacgggtgagcagaaccgtctacgacgatgat
gacgaggaggcgcgtggcgtggcgatgcgcatcgcgcgtatggtctcccaaggggctgtg
ccggacgatttcgccgtgctcactcgaatcaacgcccagcaccgagtcgtttgccgtgca
ttgcgtgagcaagatctgcattatcgggtgcgcagggatgcgggctggcagcattcggcg
cttgaggacgagggggcggggccggatcaggcgcagagtcaggcgcggcaggaggccttg
gagcagattggcgcgggcgcgcagcaaggcactcagcaaggggttacgctgtctacgatt
cacgccgccaaaggtttggaattcaagcacgtctttatcatcgggtgctcggagggcctg
ctgccgttcagctcgcccagccccggcgagcagcttgaggaggagcggcggctcatgtac
gtcggcgtgactcgtgccgaggacacgctgcacctgtcatacgcgcgtcgcaaggactcg
tcgggcggcatcgcccgtgtgccgagccgctttctgtga
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