Bifidobacterium subtile: BS3272_07375
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Entry
BS3272_07375 CDS
T07068
Name
(GenBank) HRDC domain-containing protein
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
bsue
Bifidobacterium subtile
Brite
KEGG Orthology (KO) [BR:
bsue00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bsue03016
]
BS3272_07375
Enzymes [BR:
bsue01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
BS3272_07375
Transfer RNA biogenesis [BR:
bsue03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BS3272_07375
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
QOL35752
LinkDB
All DBs
Position
complement(1713010..1714311)
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AA seq
433 aa
AA seq
DB search
MRRKSRLADEPRLQAEPRGGVPDVIDTLAGFHEACERFAAADGSVAADAERASGFRYGHE
DWLVQFKREGAGIALFDPIALGRCCADWNEFNDAVGDATWILHDSLQDLPGFADLGMRPQ
RLFDTEIAARLLGMRHFGLAAVTEHYLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELL
IELEMTMRRDLNRQGKIEWAEEEFAHALSKGMTPRKPHPVPWLRISHITALNHDGQGQAV
AKALWEERDRLARHYDIAPTLLLSDSAIITAAQKKPHNGREFRAIRALNERVRVHTGGEQ
DKMFERYAPIQREVKPSVWKGVIQQALELPEEQWPTMPVPSADAQGNAPRSMKLWSSRHP
ERFRRLQAARRMLNSIAEDTRTPAEMIVKPQIVRNLCWTDEPQRRDVVRFLAAQGARGWQ
IRLVAESLSRVII
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgaggaggaaatcgcgcttggctgacgaaccacgattgcaggcggaaccgcgcggggga
gttcctgacgtcatcgacacgcttgcgggatttcacgaggcttgcgagcgtttcgccgca
gctgacgggtccgtggcggctgacgcggaacgcgcatcggggtttcgctacggtcacgag
gactggctggtgcagttcaagcgcgaaggtgccggcatcgcgctgttcgacccgattgcc
ttaggccgctgctgtgctgattggaacgagttcaacgacgccgttggcgacgcgacgtgg
attctgcatgattcgctgcaggatcttcccggcttcgccgatctgggcatgcgtccccag
cgtctcttcgacacggagatagcggcgcggctgctgggcatgcggcatttcgggctggcc
gcagtcaccgagcactatcttggcctcactttggctaaagagcactccgcggcggactgg
tcgtaccgcccgcttcccagagactggcgcaactatgcggcgctcgatgtcgagctgctc
atcgagctggaaatgacgatgcgcagggatctcaatcgccagggcaaaatcgaatgggcc
gaagaggaattcgcccatgcgctgagcaaaggcatgacgccgcgcaaaccacatccggtg
ccgtggctgcgcatctcgcatatcaccgcgctgaaccatgacggacaaggccaggcggtg
gcgaaggccttatgggaggagcgagacaggctggccagacactatgacatcgcgccgacc
ttgctgctgtccgactcggcgatcatcacggcggctcagaaaaagccgcataatggcagg
gaatttcgcgccatacgagcgctgaacgagcgggtcagagtccacaccggcggcgagcag
gacaagatgttcgaacgctatgcaccgattcagcgcgaagtgaagccctccgtatggaag
ggcgtcatccagcaggcgcttgagctgcccgaggaacaatggccgaccatgccggtcccg
tcggcggatgcgcagggcaacgcgccacgatcgatgaaactgtggtcttcgcgccatccc
gaacgattccgccgcctgcaggctgcgcgccggatgctgaactccatcgccgaagacacg
cgcacgcccgccgagatgatcgtgaagccgcagatcgtgcgcaacttgtgctggaccgac
gagccgcagcgccgcgatgtggtgcgattccttgccgcgcaaggcgccagagggtggcag
atcaggcttgtggccgagtccctgagtcgcgttatcatataa
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