Bifidobacterium subtile: BS3272_07660
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Entry
BS3272_07660 CDS
T07068
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bsue
Bifidobacterium subtile
Pathway
bsue03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bsue00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BS3272_07660 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bsue03021
]
BS3272_07660 (rpoB)
03400 DNA repair and recombination proteins [BR:
bsue03400
]
BS3272_07660 (rpoB)
Enzymes [BR:
bsue01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BS3272_07660 (rpoB)
Transcription machinery [BR:
bsue03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BS3272_07660 (rpoB)
DNA repair and recombination proteins [BR:
bsue03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BS3272_07660 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QOL35798
LinkDB
All DBs
Position
complement(1791619..1795185)
Genome browser
AA seq
1188 aa
AA seq
DB search
MADEQATTNTTIVNARADEHDIARHLASDRVNFGSIKEPIDVPYLLGVQTDSFDWLIGNE
RWKQRVEEDETNGTNTVPHVSGLDEVFQEISPIENFAQTMSLTFSDPYFEEPRHTVQECK
EKDYTYSAPLYVNAEFENGDTGEIKSQTVFMGDFPLQTPHGTFIIGGTERVIVSQLVRSP
GVYFDRSRDRTSDKEVFGAKIIPSRGAWLEFEIDKRDVLGVRVDRRRKQSAIVFLMAIGM
TKAEIAASFKDYPLVMDALEKETIETQDDALTDLYRKIRPADTPTPEAGRNLLDSFYFNT
KRYDLARVGRYKIDRKLGLETDINDRSLSADDIIATIKYLVSLHAGDKTFPGRRNGEDVE
LRVDVDDIDHFGNRRIRQVGELIQNQLRTGLSRMERVVRERMTTQDAEAITPQSLINIRP
VNATIKEFFGTSQLSQFMDQNNPLSGVTNKRRLSALGPGGLSRDRASMEVRDVHPSHFGR
MCPIESPEGPNIGLIGSLATFGRVNPFGFIETPYRKVDNGHLTNEVVYMTADREAEHVIA
QANQEIDENGDFVAKTALVRDAAGEAEDVPIDMVDYMDVSPRQMVSVGASLIPFLEHDEG
HRALMGTNMQRQAVPLVKSERPLVGTGSEWRAAYDSGDTILAEKPGVAIYVSADIIRVMN
DDGTQSSYKLAKFQRSNQTTCYNQVPLVKDGERIEKGTVLADGPATEKGEMALGKNLLVA
FMPWNGYNYEDAVIISQRLVQDDTLSSIHIEEYEIDARETKLGAEEITRDLPNVGEDAVA
NLDERGIIRIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHG
ETGTVISVKEVTREDAEEDGDELPNGVNQMIRVYIAQHRKITVGDKLSGRHGNKGCISRI
LPEEDMPFLEDGTPIDIMLNPLGVPSRMNLGQVLELHLGWIAHAGWDITLDPDMEAEWKK
YVPQGAEKGEPGTPVATPVFDGVRPDTLRGLLSTTLSDRDGDRLVRDSGKAVLFDGRTGD
PFPKPISVGYMYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALE
AYGAAYTLHEMMTTKSDDVDGRVRAYGSIVKGENLPPAGIPESFKVLLKEMQSLSLNVEV
LNAEGVAIDMSDEDDDDMSSSEDLGFNIGARPDASAKEEQAAPEPEYR
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
ttggctgacgaacaagctacgacgaataccaccatagtcaacgcacgcgccgacgagcat
gacattgcacggcatctggcatcggaccgcgtgaacttcggttccatcaaggaacccatc
gacgtgccctacctgctgggcgtgcagaccgacagcttcgattggctgatcggcaacgag
cgctggaagcagcgcgtcgaggaggacgagaccaacggcaccaacaccgttcctcacgtc
tcggggctcgacgaggtcttccaggagatctccccgatcgagaacttcgcccagaccatg
agcctgaccttctccgacccgtacttcgaggagccgcgccacacggtccaggagtgcaag
gagaaggactacacctattccgcgccgctctacgtcaacgccgaattcgagaacggcgac
accggcgagatcaagagccagaccgtcttcatgggcgacttcccgctgcagaccccgcac
ggcaccttcatcatcggcggcacagagcgcgtcatcgtctcgcagctcgtgcgctccccg
ggcgtctatttcgatcgttcgcgcgatcgcacctccgacaaggaggtcttcggcgcgaag
atcattccgagccgtggcgcatggctcgaattcgagatcgacaagcgcgatgtgctcggc
gtgcgtgtggaccgcaggcgcaagcagtcggccatcgtcttcctcatggccatcggcatg
accaaggccgaaatcgccgcatccttcaaggactacccgctggtcatggacgctcttgaa
aaggagacgatcgaaacccaggacgacgccctgaccgatctgtaccgcaagatccgcccg
gccgacactccgacccccgaggccgggcgcaacctgctggactccttctacttcaacacc
aagcgctatgacttggcgcgcgtcggccgctacaagatcgaccgcaagctcggcctcgaa
accgacatcaacgaccgcagcctgagcgcggacgacatcatcgccacgatcaagtacctc
gtctccctgcacgccggcgacaagactttcccaggcaggcgcaatggcgaggacgtggag
ctgcgcgtcgacgtggacgatatcgaccacttcggcaatcgccgcatccgccaggtcggc
gagctgatccagaaccagctgcgcaccggtctgagccgtatggagcgcgtcgtgcgcgag
cgcatgaccacccaggacgccgaggccatcaccccgcagtcgctgatcaacatccgcccg
gtgaacgccacgatcaaggagttcttcggcacctcccagctgagccagttcatggaccag
aacaacccgctctccggcgtgaccaacaagcgacgcctctcggccttgggcccaggcggc
ctgtcgcgcgaccgcgcctcgatggaggtgcgcgatgtgcaccccagccacttcggccgc
atgtgcccgatcgaatcccctgaaggcccgaacatcggcctgatcggttcgctcgcgacc
ttcggacgcgtcaatcccttcggcttcatcgaaaccccgtaccgcaaggttgacaacggc
cacctcaccaatgaggtcgtctacatgaccgcggatcgcgaggccgagcacgtcatcgcg
caggccaatcaggagatcgacgagaacggcgacttcgtggcgaagaccgcgcttgtgcgt
gacgccgccggcgaggccgaggacgttccgatcgacatggtcgattacatggatgtctcg
ccgcgccagatggtgtcggtgggcgcctcgctcatccccttcctggagcatgacgagggt
caccgcgcgctgatgggcaccaacatgcagcgccaggccgtgccgctggtcaaatccgag
cgtccgctggtgggcaccggctccgaatggcgcgccgcctacgattcgggcgacaccatt
ctggctgagaagccgggcgtggcgatctacgtctccgccgacatcatccgcgtgatgaac
gacgacggcacgcagtccagctacaagctggccaagttccagcgctccaaccagaccacc
tgctacaaccaggtgccgctggtcaaggacggcgagcgtatcgagaagggcactgtgctg
gccgacggcccggcgaccgaaaagggcgagatggcgttgggcaagaacctgctcgtcgcc
ttcatgccatggaacggctacaactacgaggacgccgtgatcatctcgcagcgcctcgtg
caggacgacacgctgagttccattcacatcgaggaatatgaaatcgatgcgcgcgagacc
aagctcggcgccgaggagatcacccgcgacctgccgaatgtcggcgaggacgcggtggcg
aacctcgacgagcgcggcatcatccgcatcggcgccgaggtcgaggccggcgacatcctc
gtgggcaaggtcacgccgaagggcgagaccgagctgaccccggaggagcgcctgctgcgc
gccatcttcggcgagaagagccgcgaagtgcgcgacacctcgctgcgcgtgccccacggc
gaaaccggcacggtgatctcggtcaaggaggtcacgcgcgaggatgccgaagaagacggc
gacgagctgcccaacggcgtgaaccagatgattcgcgtctacatcgcccagcaccgcaag
atcacggtgggcgacaagctctccggccgccacggcaacaagggctgcatctcgcgcatc
ctgcccgaggaggacatgcccttccttgaagacggcaccccgatcgacatcatgctcaac
cccctgggcgtgccgagccgtatgaacctcggccaggtgctcgaactgcacttgggctgg
atcgcccacgccggctgggatatcacgctcgacccggatatggaagccgaatggaagaag
tacgtgccgcagggcgccgaaaagggcgagccgggcactccggtcgccactccggtgttc
gacggcgtgcgccccgacacgctgcgcggcctgctttcgaccacgctgtccgaccgcgac
ggcgaccgactggtgcgcgacagcggcaaggccgtgctcttcgacggccgcaccggcgat
cccttccccaagccgatctccgtgggctacatgtacatgctcaagctgcaccacctcgtg
gacgacaagatccacgcccgctccaccggcccgtactcgatgatcacccagcagccgttg
ggcggcaaggcccagttcggcggccagcgcttcggcgagatggaggtgtgggctttggag
gcctacggtgccgcctacacgctgcacgagatgatgaccaccaagtccgatgacgtcgac
ggccgcgtgcgcgcctacggctccatagtgaagggcgagaacctgccgccggcaggcatc
ccggagtccttcaaggtgcttctgaaggagatgcagtcgctttcgctcaacgtcgaagtg
ctcaacgccgaaggcgtggcgatcgacatgagcgacgaggatgatgacgatatgtcgtcc
tccgaggacctcggcttcaacatcggcgctcggccggacgcctccgccaaggaggagcag
gccgcgccggagcccgaataccgctag
DBGET
integrated database retrieval system
