Bifidobacterium subtile: BS3272_08895
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Entry
BS3272_08895 CDS
T07068
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bsue
Bifidobacterium subtile
Brite
KEGG Orthology (KO) [BR:
bsue00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bsue03032
]
BS3272_08895 (topA)
03400 DNA repair and recombination proteins [BR:
bsue03400
]
BS3272_08895 (topA)
Enzymes [BR:
bsue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BS3272_08895 (topA)
DNA replication proteins [BR:
bsue03032
]
Prokaryotic type
DNA Topoisomerases
BS3272_08895 (topA)
DNA repair and recombination proteins [BR:
bsue03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BS3272_08895 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QOL35998
LinkDB
All DBs
Position
complement(2085681..2088707)
Genome browser
AA seq
1008 aa
AA seq
DB search
MANGTKLVIVESPTKAKKIGGYLGSGYTVMASVGHIRDLAQPSQVPAAQKAKFGKFGVDV
DDGFAPYYIVGSDKKKTVADLRAALKDADELYLATDEDREGEAIAWHLVQTLKPKVPVKR
MVFHEITPEAIKASLLETRDVDGNMVDAQETRRVLDRLYGYELSPVLWRKVGPGLSAGRV
QSVATRLIVERERERMAFVKAAYWDVMAILGAPGVQGDDVDFASRLVSLGGKRLAVSKDF
GDDGKLTPTGFKDNVCLLDEAGATALAKSVRNAVFTVVSNESKPYRRRPMPPFTTSTLQQ
TAGNRLSMSSRQTMRAAQGLYENGYITYMRTDSVTLSQEAISAARDAVEFHFGASYLADK
PKQYATKTAGAQEAHECIRPAGSRFRDPDELNGKVPPDQLRLYRLIWQRTLASQMADATG
STATVRFSVPAGQQGEAIFQASGTVIEFPGFLRAVSGRSSAAGSTSQASQSARTAESEKP
GKSDANPRKSADENESLPPMKVGDELHASQVSADGHETQPPARYTEASLVKTLEAKEIGR
PSTYASIISTIIDRGYIYERGRALIPSWLAFAVTKLLETKFPKYVDYEFTADMENGLDQI
AHGKETGKEWLTRFYFGSGEDSARSAAEAHEGLQQQVAQLGEIDARAINTIDIGDGLHVR
VGRYGPYLEDMNHLDDAGNPKRASLPDTMAPDELTIEAGHELIEHNSSGPRELGKDPATG
GAVEVRNGRFGPYVALVAPESPENGEASASDGSARSAEGKTGKTGRSASSASKRSKKAPV
APRPKMASLFKSMSPDTLTLEDALKLLSLPREVGAIEETNAETGEVSQASIAANNGRYGP
YLTKTSADGKSETRSLGSEDEIFTVDIAQAKALFDQPKYGRGRGRGAAKPPLRELGADPE
TGKNVTIKDGFYGAYITDGETNRTLPKQYTPESIEVAEALRLLAEKRAAGPAKRRGRRTT
TSKAKSAATKTTAKKTAAKKSTTAKSTAKAGSARSGVTTRKSAAAKAQ
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacggcaccaagctcgtcatcgtggagtccccgaccaaggccaagaagatcggg
gggtatctcggcagcggctataccgtgatggcatcggtggggcatatccgcgacctcgcc
cagcccagtcaggttcccgcggcgcagaaggcgaaattcggcaagttcggcgtcgacgtg
gacgacggatttgcaccgtactacattgtcggctccgacaagaagaaaaccgtggccgac
ttgcgcgcggccctcaaggatgccgacgaactctacctggccactgatgaggaccgcgaa
ggcgaagccatcgcctggcatctcgtgcagacgctcaagcctaaggtcccggtcaaacgc
atggtattccacgagatcacgccggaggccatcaaggcgtcgctgcttgagacccgtgac
gtggacggcaacatggtcgacgcgcaggagacgcgccgcgtgctcgaccggctctatggc
tatgagctgtccccggtgctctggcgcaaggtcggaccggggctgtcggcgggccgcgtg
cagtccgtggcgacgcgactgatcgtcgagcgtgagcgtgagcgcatggccttcgtgaag
gccgcatactgggatgtcatggcaatattaggggcgccgggcgttcagggcgacgatgtc
gatttcgcttccagactcgtgtcgctgggcggcaagcggctggccgtctcgaaggatttc
ggagatgacggcaaactcactccgacggggttcaaggacaacgtctgcctgcttgacgag
gccggcgccacagcgctcgcgaagtcggtgcggaatgccgtgttcacggtggtctcgaac
gaatcgaagccctaccgccgccggccgatgccgccattcaccacgtcgacgctgcagcag
accgcaggcaaccggctgtcgatgagctcgcgccagaccatgcgcgccgcgcagggactg
tacgaaaacggctacatcacctatatgcgcaccgattcggtgacgctgtcgcaggaggct
atcagcgctgctcgcgatgcggtcgaattccatttcggcgcgtcgtacctcgctgataag
cccaagcagtatgccacgaagaccgcaggagcgcaggaggcccatgagtgcatccggcct
gccggctcgcgcttccgcgatccggacgagctgaatggtaaagtgcccccggatcagctc
agactctatcggctgatctggcagcgcacgctggcttcgcagatggccgacgcgacagga
tcgacggccacggtcaggttctctgtgcctgccgggcagcagggcgaggcgattttccag
gcgtcgggcaccgttatcgagtttcctggattcctcagggctgtttccgggcgttccagc
gctgccggcagtacatcgcaggcatcgcagtcggcgcggactgccgagagcgagaagccg
ggcaaatcggatgcgaatccgcgcaaatcggccgatgaaaacgaatccctgccgccgatg
aaggtcggcgatgagttgcatgcctctcaggtatccgccgacgggcacgagacccagccg
cccgcgcgctacaccgaggcctcgctggtcaaaacgcttgaagccaaggagatcggcagg
ccttcgacttatgcgagcatcatctcgacgattatcgatcgcggctacatctacgaacgc
ggtcgtgcgctgataccctcttggctggccttcgcggtcacgaagctgctcgagacgaaa
ttccccaagtacgtggactacgagttcaccgccgatatggagaacgggcttgaccagatc
gcccacggcaaagagaccggcaaggaatggctgacgcgattctacttcggctccggcgag
gactctgcgaggagcgccgctgaagcccacgagggcctgcagcagcaggtcgcgcagctg
ggcgagatcgacgcgcgggccatcaacacgattgacatcggcgatgggctgcacgttcgc
gtcggacgctatgggccgtacctcgaagatatgaatcacctcgatgacgccggcaacccc
aagcgtgcctcgctgcccgacaccatggctcccgacgaactgaccatcgaggccggccat
gagctgatcgagcataattcctccggtcctagggaactcggcaaggacccggcgaccggt
ggcgctgtcgaagtgcgcaatgggcgtttcggcccgtatgtggcgcttgtggcacccgaa
agcccggagaatggcgaagcctcggcttcggatgggtcggccagatcggctgagggcaag
accggcaaaacgggcagatccgcgagttccgcgtcgaagcgttcgaagaaggccccggtc
gcgccgagacccaagatggcctcgctgttcaagtcgatgagtccggacacgctgaccctc
gaggacgccttgaagctgctcagcctgccgcgcgaagtcggcgcgatcgaggagaccaat
gccgagacgggagaggtctcgcaggcgagcatagcggcgaataacggacgctacggcccg
tacctgaccaagacgagcgccgatggcaagagcgaaacgcgttcgctgggcagcgaggat
gagattttcactgttgacatcgcacaggccaaggccttgttcgaccagcccaaatatggc
cgcggacggggccggggcgctgccaagccgccgctgcgcgagcttggggccgatcctgag
accggcaagaacgtgacgatcaaagatgggttctacggcgcgtacatcaccgatggcgag
acgaaccggactctgcccaagcagtacacgcccgaatcgatcgaggtggcggaggctttg
cggctgctagccgagaagcgtgcggccgggccggcgaaacgccgggggcgccggacgacg
acgtcgaaggcgaaatccgccgcgacaaagaccactgcaaagaaaaccgccgcaaagaag
tccacgaccgctaagagcacggcgaaggccggatccgccaggagcggcgtgaccacccgc
aagagcgctgcggccaaggcccagtga
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