Brucella suis bv. 2 Bs143CITA: BSSP1_II0562
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Entry
BSSP1_II0562 CDS
T03367
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bsui
Brucella suis bv. 2 Bs143CITA
Pathway
bsui03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsui00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSSP1_II0562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsui03019
]
BSSP1_II0562
03016 Transfer RNA biogenesis [BR:
bsui03016
]
BSSP1_II0562
Enzymes [BR:
bsui01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BSSP1_II0562
Messenger RNA biogenesis [BR:
bsui03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BSSP1_II0562
Transfer RNA biogenesis [BR:
bsui03016
]
Prokaryotic type
tRNA degradation factors
BSSP1_II0562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AIB29386
LinkDB
All DBs
Position
II:564194..566545
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AA seq
783 aa
AA seq
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MARRFSKSDTGRSARTERRAATAQSKDSAAFLPTREEVLKYIEENPDRAGKRELAKAFNI
KGDARVYLKDLLRELADEGLVEKRARKLSRPGSLPSVAVLDITGRDEDGGLLARPAEWDE
ASHGKPPVVLLRRTRLNKTSESGPIVGVGDRVLAKIFRNEDHAGPDFSARVMKRLEHHAN
AVLGVVRKLGNGEWRLEPVNRKQGEVQLDPAMLENAESGDLVEVELLSARRYGLPRGKVR
QVVGSIDSEKALSMIAIHEHEIPHVFPDEVLREAETAGPATLEGREDWREIPLITIDPAD
AKDHDDAVYAEPDTDPENPGGQVVIVAIADVAAYVRRGSALDREAQKRGNSVYFPDRVVP
MLPERISNDLCSLREMEDRPALAVRMIFSADGRKKSHKFHRIMMRSAAKVAYGQAQAAID
GAPDDKTGPILDTVLKPLWNAYAVLKRGRDAREPLELDLPEKKILLTPEGKVDKVIVPER
LDAHKLIEEFMIQANVSAAETLEGRHQPLIFRIHGEPALAKQETLREFLRTLDLNLAKGA
QLQPAQFNRILAAVDGTDHQELVNQVVLRTQSQAEYSPDNIGHFGLHLRRYAHFTSPIRR
YADLIVHRALIKALGLGTDGLTSAEEAQLEEISALISATERRAMLAERETVDRLIAHFLA
SHLGDEYEGRVTGVTRAGLFVNLATYGADGLVPISTLGHEYYLYDEANHAIAGERSGRGF
RLGDTVTVRLVEALPVAGALRFEMVSEPHPLPMSTRSHHKASRAMRGRKGKPACIPRHKR
RGH
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
ttggcacgccgtttttccaaatccgataccggacgatccgcacggaccgagcggcgtgca
gccacagcccaatcgaaagattccgcagcctttttgccgacacgggaagaggtcctcaaa
tatatcgaggaaaatcccgatcgcgcgggcaagcgggaactcgccaaggctttcaacatc
aagggcgatgcacgggtctatctgaaagacctgttgcgtgagcttgccgatgaaggtctc
gtcgaaaagcgcgcgcgcaagctttcgcgtcccggctcgctgccatcggttgcggttctc
gatattacgggccgggatgaggatggaggcctgcttgcccgcccggctgaatgggatgag
gcgagccacggcaagccgccagtggtcctgctgcggcgaacccggcttaacaagacgtca
gaaagtggccctatcgtcggcgttggcgaccgcgttctggcgaaaatcttccgcaatgaa
gatcacgcagggccggatttttccgcccgcgtgatgaagcggctggaacatcacgccaat
gccgttctgggcgtggtgcgcaaacttggcaatggcgaatggcggctggagccggtcaat
cgcaaacagggcgaagtgcagcttgatcccgccatgctggaaaatgccgaaagcggcgat
ctggtggaagtagaactgctttccgcgcgccgttacggcctgccgcgcggcaaggtccgt
caggtggttggctccatcgatagtgaaaaggcgctgtcgatgatcgccattcacgaacat
gaaatcccgcatgtttttcctgacgaagtgctgcgcgaggctgaaaccgcaggccctgcc
acgctggaaggccgcgaagactggcgcgaaatcccgctcatcaccatcgatccggccgac
gccaaggaccatgacgatgcggtctatgccgaaccggatacggacccggaaaatcccggc
gggcaagtcgtcatcgtcgccatcgccgatgtcgccgcctatgtgcggcgcggctcagcc
cttgatcgcgaagcgcagaaacgcggcaattccgtctattttcccgaccgcgttgtaccg
atgctgcccgaacgcatctccaatgatctttgctccctgcgcgagatggaagaccggccg
gcgctggcggtccgtatgattttcagtgccgacgggcgcaagaaatcacacaagttccac
cgcatcatgatgcgctcggccgccaaggttgcctatggccaggcgcaagccgccatagac
ggcgcccccgatgacaagaccgggccgattcttgataccgttctaaagccgctctggaac
gcctatgcggttctcaagcgcgggcgtgacgcacgcgagccgctggaactcgatctgccg
gaaaagaaaatcctactgacgccggaaggcaaggtggacaaagtcatcgtgccggaacgc
ctcgatgcgcataagctcatcgaagaattcatgattcaggccaatgtgtctgccgccgaa
acgctcgaaggacggcaccagccgcttattttccgcattcacggtgaaccggcgctggcc
aagcaggaaaccctgcgtgagttcctgcgtacgctggatctcaatcttgccaagggtgcg
caactgcagcccgcgcagttcaatcgcattctggcggcggtcgatggcacagaccatcag
gaactcgtcaatcaggtcgtgctgcgcacccagagccaggccgaatacagccccgacaat
atcggccattttggcctgcatctgcgccgttatgcgcatttcacctcaccaatccgccgt
tatgctgatctgatcgtgcaccgcgcgctcatcaaggcgctggggcttggcacggacggg
ttgacgagcgcggaagaagcgcagcttgaagagatttcggccctgatttcggccaccgaa
cgccgcgccatgctggctgagcgtgaaaccgtggatcggctgatcgcgcatttcctcgcc
tcgcatctcggcgacgaatatgaggggcgcgttaccggcgtcacgcgcgccggtctattc
gtcaatcttgcgacatatggcgcagacggactggtgcccatttcaactttgggccatgaa
tattatctatatgacgaagcaaaccacgcaatcgcgggcgaacgaagcggcaggggcttt
cgtctgggcgatacggtaacggtgaggcttgtggaagcactccccgttgcgggtgcgctt
cgttttgaaatggtttccgaaccgcaccccttgcccatgtcgacgcgctcgcatcataag
gcgagccgggcaatgcggggccggaaaggcaagccggcgtgtattccccgccacaagagg
agaggtcactga
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