Bacillus subtilis subsp. subtilis AG1839: BSUB_01580
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Entry
BSUB_01580 CDS
T03442
Symbol
rnjA
Name
(GenBank) ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bsut
Bacillus subtilis subsp. subtilis AG1839
Pathway
bsut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSUB_01580 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsut03019
]
BSUB_01580 (rnjA)
Messenger RNA biogenesis [BR:
bsut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BSUB_01580 (rnjA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
SIS_2
DUF4453
Motif
Other DBs
NCBI-ProteinID:
AIC44098
LinkDB
All DBs
Position
complement(1506669..1508336)
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AA seq
555 aa
AA seq
DB search
MKFVKNDQTAVFALGGLGEIGKNTYAVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYL
VKNEDKIKGLFITHGHEDHIGGIPYLLRQVNIPVYGGKLAIGLLRNKLEEHGLLRQTKLN
IIGEDDIVKFRKTAVSFFRTTHSIPDSYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNSENPEFTMSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQ
VIEAAVQNGRKVAVFGRSMESAIEIGQTLGYINCPKNTFIEHNEINRMPANKVTILCTGS
QGEPMAALSRIANGTHRQISINPGDTVVFSSSPIPGNTISVSRTINQLYRAGAEVIHGPL
NDIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKMHVKLATDCGIPEENCFIMDNGE
VLALKGDEASVAGKIPSGSVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSIDMDDFKI
SAGPDLISRGFVYMRESGDLINDAQELISNHLQKVMERKTTQWSEIKNEITDTLAPFLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgtaaaaaatgatcagactgctgttttcgccctcggaggtttgggcgaaatc
ggtaaaaatacgtacgcggtgcaattccaggatgaaattgtactgattgatgcggggatc
aagtttcccgaggacgaactgctcggaattgactacgtcatccctgattatacgtattta
gtcaaaaacgaagataaaattaaagggctttttatcacccacgggcacgaagaccacatc
ggcggtattccatacctgctcagacaagtgaatattcctgtatacggcggaaaactcgcg
atcggcttacttcggaataaacttgaagagcatggattattgagacagacgaaactgaac
attatcggcgaggatgatattgtaaagttccgcaaaacggctgtgtcattcttcagaaca
acacacagtattccggattcctacggcattgttgtaaaaacgccgcccggaaacatcgta
catactggggatttcaaattcgactttactccagtcggcgagccggcaaacttaacgaaa
atggccgaaatcggtaaagaaggcgttttgtgccttctttcagacagcacaaacagtgaa
aatccggagtttaccatgtctgagcgccgtgtaggagaaagcattcatgacattttccgc
aaggtggacggccgaattatcttcgccacatttgcgtcgaatattcaccgcttgcagcag
gtaattgaagctgctgtacaaaatggaagaaaagttgccgtatttggacgcagtatggaa
tcggctatcgaaattggacagacactcggttatattaactgtcctaaaaatacgtttatt
gagcataacgaaatcaatcgtatgcctgctaataaagtaacaattttatgtacaggaagc
caaggggaaccaatggcggcgttatcaagaattgcaaacggcacacaccgccaaatttca
atcaatcctggggatacagtcgtattttcttcatcccctatcccaggcaacacaatcagc
gtgagtcgaacaatcaaccagctgtatcgtgcgggtgctgaggttattcacggccctctt
aacgatatccatacatccggtcacggcggacaggaagaacagaagctgatgcttcgttta
atcaagcctaaattcttcatgccgattcacggtgagtacagaatgcaaaagatgcatgtc
aaacttgcaacagattgtggcatcccagaggaaaactgctttatcatggataatggtgaa
gtattagcacttaaaggcgatgaggcttcagttgcaggaaaaatcccgtccggttcagtg
tacattgacggaagcggtatcggtgatattggcaatatcgtacttcgtgatcgcagaatt
ctctctgaagaaggacttgtcatcgttgttgtcagcattgacatggacgacttcaagatt
tcagcgggtcctgatttgatttccagaggatttgtgtacatgagagaatctggtgacttg
atcaacgacgctcaagagctcatttcaaatcacttacaaaaagtaatggaacgaaaaacg
actcaatggtctgaaatcaaaaacgaaattacagacacgcttgcacctttcttgtacgaa
aaaacaaagcgccgtccaatgatcctgccgatcattatggaggtttaa
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