Bacillus subtilis subsp. subtilis BAB-1: I653_00275
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Entry
I653_00275 CDS
T02520
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bsy
Bacillus subtilis subsp. subtilis BAB-1
Pathway
bsy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I653_00275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsy03400
]
I653_00275
Enzymes [BR:
bsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I653_00275
DNA repair and recombination proteins [BR:
bsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I653_00275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_14
Motif
Other DBs
NCBI-ProteinID:
AGI27326
LinkDB
All DBs
Position
60366..63899
Genome browser
AA seq
1177 aa
AA seq
DB search
MDNIQTFIKESDDFKSIINGLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNL
YQAQKVTDDLTSLLEDRSVLLYPVNELISSEIAVASPELRAQRLDVINRLTNGEAPIVVA
PVAAIRRMLPPVEVWKSSQMLIQVGHDIEPDQLASRLVEVGYERSDMVSAPGEFSIRGGI
IDIYPLTSENPVRIELFDTEVDSIRSFNSDDQRSIETLTSINIGPAKELIIRPEEKARAM
EKIDSGLAASLKKLKADKQKEILHANISHDKERLSEGQTDQELVKYLSYFYEKPASLLDY
TPDNTLLILDEVSRIHEMEEQLQKEEAEFITNLLEEGKILHDIRLSFSFQKIVAEQKRPL
LYYSLFLRHVHHTSPQNIVNVSGRQMQSFHGQMNVLAGEMERFKKSNFTVVFLGANKERT
QKLSSVLADYDIEAAVTDSKKALVQGQVYIMEGELQSGFELPLMKLAVITEEELFKNRVK
KKPRKQKLTNAERIKSYSELQIGDYVVHINHGIGKYLGIETLEINGIHKDYLNIHYQGSD
KLYVPVEQIDQVQKYVGSEGKEPKLYKLGGSEWKRVKKKVETSVQDIADDLIKLYAEREA
SKGYAFSPDHEMQREFESAFPYQETEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIGDGKQVALLVPTTILAQQHYETIKERFQDYPINIGLLSRFRTRKEANETIK
GLKNGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYN
RVEDIERKADEISMLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDI
PNVNTLIVFDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQFE
TEIDVELDAYIPETYIQDGKQKIDMYKRFRSVATIEEKNELQDEMIDRFGNYPKEVEYLF
TVAEMKVYARQERVELIKQDKDAVRLTISEEASAEIDGQKLFELGNQYGRQIGLGMEGKK
LKISIQTKGRSADEWLDTVLGMLKGLKDVKKQTISST
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggacaacattcaaacctttataaaagaaagcgatgactttaaatccatcatcaacggt
ttacacgagggcctgaaggaacagctgctcgcgggtctgtcgggttccgcgcgttctgtt
tttacttctgctctggctaatgaaacgaataagcctatctttctaatcacccataactta
tatcaagcccagaaagtaacagatgatctgacttcacttctagaggatcggtctgtcctt
ttgtatcccgtcaatgaactcatttcatcagaaatcgcagttgcaagccctgaattgcgg
gcacagcgattagatgtcattaatagactaacgaatggagaagcgccaattgtcgttgct
ccggtagctgcaatcagaagaatgctgccgcctgtagaggtgtggaaaagcagccagatg
ctcattcaagtaggccatgatatcgaacctgaccagcttgcctcacggctggtagaggta
gggtatgagcggtctgatatggtttctgcgcccggggaattcagtattcgcggtggaatc
attgacatttatccgttgacttcagagaatccggtgagaattgaactttttgacaccgag
gtggattcaatccgcagctttaattcagatgatcagcggtcaattgagacccttacctcg
atcaatatcggtcccgcgaaggaattaattatcagaccggaagaaaaagcgcgggcgatg
gagaaaatcgatagtggtcttgccgcgagcctgaaaaaattaaaggctgacaaacaaaaa
gaaatacttcatgcgaatatttctcacgataaagaacgcttgtctgaaggccagacagat
caggagctcgtgaagtatctctcatatttctatgaaaagcctgctagtttactagattat
acacctgataatacacttctgattttggatgaagtcagtcggattcatgagatggaagaa
cagcttcaaaaagaagaagcggagtttatcacaaatcttcttgaggaagggaagattttg
catgacattcgtttgtcattcagcttccaaaaaatagtggctgagcaaaaacggcctctg
ctgtactactctttatttttgcggcatgtacaccatacgagcccgcaaaatatcgtcaat
gtgtcaggccggcaaatgcagagtttccatggccaaatgaacgtgcttgcgggcgaaatg
gagcgttttaaaaaatcaaatttcactgttgtgttcttaggagcaaacaaggaacgtaca
cagaaattgtcatctgttttggctgattatgatatcgaggccgccgtgacagacagcaaa
aaagcgcttgttcagggacaggtctatatcatggaaggcgagctccaatcgggatttgag
ctgccgttaatgaagcttgccgttatcacggaagaagaactgttcaaaaaccgtgtaaag
aagaagccgcgaaaacagaagcttaccaatgcagagcgcatcaaaagctattctgagctt
caaattggagattatgtcgttcatattaatcacgggatcggaaaatacctggggattgag
actcttgaaatcaacggcattcataaagactatttaaatatacattatcagggaagtgac
aagctttacgtccctgtagaacaaattgatcaggtccaaaaatatgtcggctccgaagga
aaagagccaaagctgtataaattaggcggaagtgaatggaagcgggtcaagaaaaaagta
gagacatccgttcaggatattgctgatgacttaattaagctgtatgccgaaagagaagcg
agcaagggctatgcgttttctcctgaccatgagatgcagcgtgaattcgaatcggctttc
ccttatcaagagactgaggatcagctccgttctattcacgaaatcaaaaaagacatggaa
agagaacgtccgatggaccgcttgctgtgcggagatgtgggctacggtaaaacagaggtt
gccatacgtgccgcgtttaaggcgatcggtgacggaaagcaggtagctctgctcgttccg
acaacaattttggcacagcagcactatgaaaccataaaagagcgcttccaggactatccg
attaatatcggccttctcagcaggttcagaacgagaaaagaagcaaacgaaacaatcaaa
gggctgaaaaacggaacggttgatatcgtcatcgggacgcatcggctgctatcaaaggat
gtcgtgtataaagatttagggctcctcatcattgatgaagagcagcgtttcggtgtaacc
cataaagaaaagatcaagcaaataaaagccaatgttgatgtattaacgttaacagcaacg
ccgattccgcgtacgctgcatatgtctatgcttggcgtaagggacctttcagtcatcgag
actccgccggaaaatcggttccctgtacagacgtatgttgtggaatacaacggagctctt
gtcagagaggcaattgaacgtgagcttgcacgcgggggccaagtctatttcttgtacaac
cgggtagaggacattgagcggaaagcggatgaaatttcaatgctagtccctgacgcgaag
gtagcatatgcgcatgggaaaatgacagaaaatgaattagaaaccgttatgctaagtttc
cttgaaggagaatcagacgttctcgtcagcacaaccattatcgaaactggcgtggacatc
ccgaacgtcaatacgttgatcgtatttgacgccgacaagatgggactttctcagctttac
cagctgcgggggcgtgtcggtcgttctaaccgtgtggcgtatgcgtacttcacgtatcgc
cgggataaagtgctgacagaagtggctgaaaaaaggctgcaggctattaaagaattcaca
gagctaggttccggttttaaaatcgcaatgcgtgacttaacgattcgcggagccgggaat
cttcttggtgcccagcagcatggcttcattgattcggtcggatttgacctctattcacaa
atgctgaaggaggccattgaggagcgtaaaggagacacagcgaagacagagcagtttgaa
acagaaattgatgtcgagcttgatgcgtatattccggaaacttatattcaagacggcaaa
cagaaaattgatatgtataaacgcttcaggtctgtggcgacaatcgaagagaagaatgag
cttcaagatgaaatgatcgaccgctttggaaactatccaaaagaagtcgaatacttgttt
actgttgcagaaatgaaggtctatgcgagacaggaacgtgtcgaactgattaagcaggat
aaagatgctgtcagattgacgatttctgaagaagcaagtgctgaaattgacggacagaag
ctgtttgagcttggcaatcaatatggcagacaaatcggactgggaatggaagggaaaaaa
ctcaaaatctccatacagacgaaaggccgtagtgctgatgaatggctcgacaccgtgctg
ggcatgctgaagggcttaaaagatgtgaaaaagcaaaccatttcatcaacgtaa
DBGET
integrated database retrieval system
